RNA id: TU10082


Basic Information

Item Value
RNA id TU10082
length 1313
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G6887
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26933132 ~ 26942207 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttattcaGTGAATATTGTGCATTATTAAAGATGTTAACAAAGAGAATCACAGAAGAAGAAAATCAAGTTACCATTACAGTGATCAGTGTTTAAGCCACATTTTTGTTCAGCcataatattattatgtcaAGGGTGATGAAAAgaggagtaaatgatgaccaaaTGATGTAAAAAATGATGAATCAGATAAACACCAgcttaaagacttttaaaatagttttcgtTCCCTTTCAGACAGCAGTGAgtgtctgaaataaaatatagctaATATGAGGGTTTTGTTCATGAGCTGCcttttgacagaaaaaaagattgttctttcaaaattcatcaaataaacaGAAGTACACTCAGCTGAATGTATATGTCCTGTAATGTTTCATAGGCTAACTCTATGTGACAAATTTGCGAACCTgataaattcattcattcgtgATCAATGAATATAGTAAAACATAGACGCTTTGGGATTTAAACCGTTAAcgaaatgtaatgtaaacaaacggctgcttttatcagctgatGAAATGCTGGGGTTGCGTGACGTTTTTCCAGGAGGCGTAGCTCATTAATGAAggatttttcatatttacattaggCCTGGAGGACTCTGAGGGCCCCTGGTGGCCCTTCATTGAGAAGCAGTGGATTAAAGAGCTTCACTGGTAATTATGTACGGGATCAATGATATTGATCAAACCACCATTCACCAAACAATATCCCTCCAGACGTAGACCTATCTGATGTATAAAGTAAAGTCATGTTTGTTCAGCGGAATCGCTAATTTAGTGGAACGTTATGTCACATTTAGCATGTTCAGTTTGTGATCACGGGATACAGTCCTTCATGCGACATTGACGCTGCTGTAGATCACGGAGGAATCATCCACCGCTTCAGAGTTTAATCTGTTCAACAAGTCAAAGATGAACCACATCAATGTctgcagaaaaagaaagctGGAGATGTGTTTGTTGGCTTGAAGTGTGTCTCACCCGGCAGAAGGAGTGTTTCTGTTCTGACGTCCAGTCTCTGTGGTTGTGTTTCTGTGGAGCTGGACGCTGGCGTACTGGACCTCGTCTTCATCTCCAGCTCTCGGGGGTTTTCTGGCTCTGCTGTGAGCGACGCTGGAGTAAACTACATCCTTCGGATCGGCTGTTTCTGAAGGTTTCACGCTCTTCTCATCCGTCTCGGCTGTGCTGTTGTTTTCCTGAATGAACACACACTCCGGATGATCTCTCTGTGATCACTATTACATGAACTACAATTACATGCTGTTCTGGACTTGCCTGTTTTGAAACGTCTCTTTGGACG

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10072 lncRNA downstream 13098 26917679 ~ 26920034 (-) False si:ch211-286b5.5
TU10071 lncRNA downstream 13134 26917679 ~ 26919998 (-) False si:ch211-286b5.5
TU10026 lncRNA downstream 67395 26809948 ~ 26865737 (-) False G6856
TU10030 lncRNA downstream 67395 26863103 ~ 26865737 (-) True G6856
TU10053 lncRNA downstream 168652 26760004 ~ 26764480 (-) True G6870
TU10127 lncRNA upstream 42337 26984544 ~ 26985660 (-) False LOC122349164
TU10130 lncRNA upstream 52231 26994438 ~ 26994699 (-) True G6923
TU10133 lncRNA upstream 64440 27006647 ~ 27007143 (-) True G6926
TU10134 lncRNA upstream 65296 27007503 ~ 27007987 (-) True G6927
TU10136 lncRNA upstream 66949 27009156 ~ 27009552 (-) True G6929
XM_043224501.1 mRNA downstream 13103 26917669 ~ 26920029 (-) True si:ch211-286b5.5
XM_043223173.1 mRNA downstream 15517 26912603 ~ 26917615 (-) True si:ch211-286b5.4
XM_043223267.1 mRNA downstream 15519 26912603 ~ 26917613 (-) False si:ch211-286b5.4
XM_043223346.1 mRNA downstream 15520 26912603 ~ 26917612 (-) False si:ch211-286b5.4
XM_043224264.1 mRNA downstream 21316 26911058 ~ 26911816 (-) True nanos3
XM_043245477.1 mRNA upstream 38098 26980305 ~ 26983587 (-) True LOC122349409
XM_043245108.1 mRNA upstream 43152 26985359 ~ 26992582 (-) True LOC122349164
XM_043238097.1 mRNA upstream 72270 27014477 ~ 27024300 (-) True LOC122344082
XM_043238115.1 mRNA upstream 109520 27051727 ~ 27054595 (-) True dnajb1b
XM_043238130.1 mRNA upstream 123951 27066158 ~ 27067828 (-) True ndufb7
TU10045 other downstream 130207 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 130207 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 515253 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 515253 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 797646 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 255698 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 299017 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 812575 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 812575 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 1132441 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile