RNA id: TU10177


Basic Information

Item Value
RNA id TU10177
length 219
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G6961
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27316372 ~ 27329327 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGTTGACATGGTTGACGGCTTCATTACGGCGCTCCACCACCAACAGCATCCCACTGATTTGTACAGTATCTCCTTGTCTTGTTTTAGGTAGTTCTTAACCATGATCTTCACGTTCAGGTCTCCTCCAGAGTAATCCTGAGCCTCCAGAAATACCTTCTCTGAGGAACCCACCCTCAGCAAGTTAGGAGCTGACAGAACGTACCTGAGGAGATCAAAT

Function

GO:

id name namespace
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05150 Staphylococcus aureus infection
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10172 lncRNA downstream 1858 27312943 ~ 27314514 (-) True G6956
TU10217 lncRNA downstream 10678 27303100 ~ 27305694 (-) True G6983
TU10215 lncRNA downstream 11200 27303100 ~ 27305172 (-) False G6983
TU10214 lncRNA downstream 14097 27301806 ~ 27302275 (-) True G6982
TU10213 lncRNA downstream 18761 27297175 ~ 27297611 (-) True G6981
TU10220 lncRNA upstream 45990 27375317 ~ 27383893 (-) False LOC122344630
TU10240 lncRNA upstream 116144 27445471 ~ 27448558 (-) True G6996
TU10248 lncRNA upstream 168567 27497894 ~ 27498743 (-) True G7000
TU10257 lncRNA upstream 262046 27591373 ~ 27592450 (-) True G7009
TU10258 lncRNA upstream 264394 27593721 ~ 27595844 (-) True G7010
XM_043238095.1 mRNA downstream 27051 27280301 ~ 27289321 (-) True dennd1c
XM_043238096.1 mRNA downstream 27054 27280301 ~ 27289318 (-) False dennd1c
XM_043238077.1 mRNA downstream 61306 27240324 ~ 27255066 (-) True LOC122343833
XM_043238076.1 mRNA downstream 77639 27223905 ~ 27238733 (-) True c3a.6
XM_043238079.1 mRNA downstream 92611 27208559 ~ 27223761 (-) False c3a.4
XM_043238103.1 mRNA upstream 50671 27379998 ~ 27393878 (-) True LOC122344156
XM_043238153.1 mRNA upstream 53465 27382792 ~ 27385079 (-) True LOC122344630
XM_043238107.1 mRNA upstream 88626 27417953 ~ 27421722 (-) True LOC122344221
XM_043245167.1 mRNA upstream 93627 27422954 ~ 27426147 (-) True LOC122349201
XM_043238106.1 mRNA upstream 102403 27431730 ~ 27438279 (-) True LOC122344204
XR_006250838.1 other downstream 61305 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 113805 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 513447 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 513447 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 898493 26416883 ~ 26417879 (-) False smdt1b
TU10417 other upstream 425455 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 425455 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 745321 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 914801 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 1061712 28391039 ~ 28392053 (-) True G7508

Expression Profile