RNA id: TU10248


Basic Information

Item Value
RNA id TU10248
length 579
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G7000
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27497894 ~ 27498743 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGGCTCGTTAGTTAGAAAGCAGCTAGCGCATGATGCTAACAGCGCTAACGAATTTACACTAACTGTCCGTCTATTAACTGTAGCGTCTGgcaagaattaaaaaatgattataattttaactgcttttcatttttactgtaactgtaataGAACATAGACTGGCCATCATAATAATGTGTTGTCATGACTACAGTCTGTGAAGGGGAGGGGCTTCCACTGAGTACAGTATCCTGACGTGCCTGTTATGTTTAATATTGCTATAGTTTGtaaaattatctttatttgtttagtgcTTTATGGAATAGATtgtcaaatctttatttttattaaagcagacaCATCAAATGATGGCTGAAGTgaaaaggagaaggagaaaacTGAAGCCAGTTGATGAGGCCATACAGTTTTCACTACTACAGAAAGACAAATCTGGTCTTGAAGGAAGATTCATCAATGATTTTAAAGGcaaAGGTGTGTTTGAGAAAGGAGATTTCCTGCTGGAATATAGAGGGGACCTCATAGATAAAGAAGAATGTGAACGGAGGCAAAGGATATATCATGATGCACTTAAAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10240 lncRNA downstream 49336 27445471 ~ 27448558 (-) True G6996
TU10220 lncRNA downstream 114001 27375317 ~ 27383893 (-) False LOC122344630
TU10177 lncRNA downstream 168567 27316372 ~ 27329327 (-) True G6961
TU10172 lncRNA downstream 183380 27312943 ~ 27314514 (-) True G6956
TU10217 lncRNA downstream 192200 27303100 ~ 27305694 (-) True G6983
TU10257 lncRNA upstream 92630 27591373 ~ 27592450 (-) True G7009
TU10258 lncRNA upstream 94978 27593721 ~ 27595844 (-) True G7010
TU10263 lncRNA upstream 147280 27646023 ~ 27646725 (-) True G7012
TU10265 lncRNA upstream 149184 27647927 ~ 27648286 (-) True G7014
TU10424 lncRNA upstream 237835 27736578 ~ 27745295 (-) True G7106
XM_043238102.1 mRNA downstream 56132 27438436 ~ 27441762 (-) False LOC122344130
XM_043238101.1 mRNA downstream 56894 27438436 ~ 27441000 (-) True LOC122344130
XM_043238106.1 mRNA downstream 59615 27431730 ~ 27438279 (-) True LOC122344204
XM_043245167.1 mRNA downstream 71747 27422954 ~ 27426147 (-) True LOC122349201
XM_043238107.1 mRNA downstream 76172 27417953 ~ 27421722 (-) True LOC122344221
XM_043228661.1 mRNA upstream 105435 27604178 ~ 27633774 (-) True gcgrb
XM_043250613.1 mRNA upstream 225435 27724178 ~ 27726902 (-) True si:dkey-27j5.5
XM_043250537.1 mRNA upstream 260475 27759218 ~ 27765006 (-) False LOC122352823
XM_043250528.1 mRNA upstream 260475 27759218 ~ 27765006 (-) False LOC122352823
XM_043250551.1 mRNA upstream 260475 27759218 ~ 27765006 (-) False LOC122352823
XR_006250838.1 other downstream 242827 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 295327 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 694969 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 694969 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1080015 26416883 ~ 26417879 (-) False smdt1b
TU10417 other upstream 256039 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 256039 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 575905 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 745385 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 892296 28391039 ~ 28392053 (-) True G7508

Expression Profile