RNA id: TU10258


Basic Information

Item Value
RNA id TU10258
length 2124
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G7010
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27593721 ~ 27595844 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACTCTTTTGATTCAGATCCGATCGAACCGAGTTTAATGAACGGACTGAACTGAACCCTTCTTCTGAATTGCCTTATTTTACTATACAAATGAATGTTAGGCACACAAAAGGAGATGACAAACACGTTCTCTTTCACCGTTTAATGGACATGATGAAAAATATGCgtagtaataatgtaaaaacgcCAAATGCAGCTTTTATATCCATTAAAGAAAAGTAAACGGGCTCATTCTCCAGCTCCCCCAGAGGTAATAAGTTTTACAATTTTGTATTCAGCCGATCTTCGCAATCCAGAATTTGCCATTGCTGGACGCTGAGTCTTTTCTTGtctcccaaaacctttaaaatatctGGTTGTAATTCTGTGACTGTATATGTATGATTCCATCTTTCATTTACCTGATGATGATCTAATGAACCTTAAGGAGGTTAACCAATATGCAGTATAATATGCAGAAACTAAGTCTTCTAAGTTactccagttttttttttaaggttgatgtacatttttcatttatagtttGTGTAAATTCAcgtaaatttacaaaaatatttaaaaagaaatactacTGAGATCAATATCTTGCTATAATGTACAACTAAACTAAACTGTCCTGAAACTGCAGCCTACGGTTGTGCAGGAGCTATTgttttttcatcatcatcatcatcatcatctgctgCTCCATATACAGCATTAAATTCAGATACataacatttagtttaaatgatCTTTAATGCTTACTAGAATACATCCTGTGATGTAATTAAAGGTATTAGCATCAAGCTACACTTTAACATGTATGTAATTATTAACGTATTTGCTTAAACACACACTTGAAGCTAATAATGGGCAAAAGtaatattgcttaaaaaaacgTAATGCTTAAATATTGGAAAGAAGAACTGCACTGCTCAGGCTTTGTAGGGGCGGTGGAGACAATAATTATTCATGCCGCAGTGCATGATGGGAGTTTTCACTATGGTATTACTATTACACAGCATGTATTGCACCATGAAGAATTTTGTTGATTGCCACCGTTGTAGAGGTTCATGTGCTGGTTCTTGATGATGCATCACATGTAGTTTCACATGTAgttcatataaacaaataaaacaagaaaacattttggatgtgaataatACCCTTTGATTACCTCATCATATGTAAACACCTACTACTCGCTCACTGTCCAGCGCTGATGTCGCTGCTTCTCTGATCAATCCAGCATAAACAAGctagttttattgatttaatctTTATCATGGAATTACACCATTCATATGTTATCAAGAACAATTCATTTATAGTATGCAAGAGATGATGTTACATTTCCAgtaataaagaaatgttaaacaGGACATCTACGCTGGAGAAGGATGTCTTGGATTTTGGAGATACCGCTGTATCGCTCCCTGTGTTCTTTCGTTtggctttcttcttttgtaGGCCAGTATTCAACCCAGGTCTGCTCTCCAAACATATACTGCAGACTAAAAACACCAGAAAACACTATTGAAAAAcatatgaattcattttttttaataagtgtacactaaaaagcctttttttaggCATAGTTTGACTTGGTTTTCATCAGTCTGACAAATGACTCATCCaggaattttatttaaatgtcaccataatatatttctaaatacattATGATGTTAGGCTGCATTCTATAAATTCATCCGTTTATTTACTGGGTTCTGGTTCTTTTTGTTCAGCTCTCACATAAAAGCCAGACAAAAAACTTGTATGTGACCGTATTGACAACAACCACCAGGCTATGTACAACGATCAGCCAGAAGAAGTTGACTATAAGAACTTAACAATCCCATTTACTAAAGAAACTCAAATTGATAACAGTATGAGGCTTCGTGTAGATTCCCTATCCTGTGTGCAGCTCTGGCACGTCACAAGCTGATCTGTGACAGAAGAAATTTGCCAGATGCTTTTCCAGATCTTTGGGCTGAGCTGTTGTCTATGTATTGGCGTGTTTCTCCAATGAGTGATTTCTGTCCAAGGGCTGATTTTGTTGTGCGTAGCTTTGCACAAAAGGATTTTTGAAATCTCGATAGCTGATTCTGCCTTTTCATTCAGTTTGGGATATTTCTTG

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10257 lncRNA downstream 1271 27591373 ~ 27592450 (-) True G7009
TU10248 lncRNA downstream 94978 27497894 ~ 27498743 (-) True G7000
TU10240 lncRNA downstream 145163 27445471 ~ 27448558 (-) True G6996
TU10220 lncRNA downstream 209828 27375317 ~ 27383893 (-) False LOC122344630
TU10177 lncRNA downstream 264394 27316372 ~ 27329327 (-) True G6961
TU10263 lncRNA upstream 50179 27646023 ~ 27646725 (-) True G7012
TU10265 lncRNA upstream 52083 27647927 ~ 27648286 (-) True G7014
TU10424 lncRNA upstream 140734 27736578 ~ 27745295 (-) True G7106
TU10425 lncRNA upstream 141147 27736991 ~ 27743957 (-) False G7106
TU10451 lncRNA upstream 185269 27781113 ~ 27961298 (-) True G7125
XM_043238102.1 mRNA downstream 151959 27438436 ~ 27441762 (-) False LOC122344130
XM_043238101.1 mRNA downstream 152721 27438436 ~ 27441000 (-) True LOC122344130
XM_043238106.1 mRNA downstream 155442 27431730 ~ 27438279 (-) True LOC122344204
XM_043245167.1 mRNA downstream 167574 27422954 ~ 27426147 (-) True LOC122349201
XM_043238107.1 mRNA downstream 171999 27417953 ~ 27421722 (-) True LOC122344221
XM_043228661.1 mRNA upstream 8334 27604178 ~ 27633774 (-) True gcgrb
XM_043250613.1 mRNA upstream 128334 27724178 ~ 27726902 (-) True si:dkey-27j5.5
XM_043250537.1 mRNA upstream 163374 27759218 ~ 27765006 (-) False LOC122352823
XM_043250528.1 mRNA upstream 163374 27759218 ~ 27765006 (-) False LOC122352823
XM_043250551.1 mRNA upstream 163374 27759218 ~ 27765006 (-) False LOC122352823
XR_006250838.1 other downstream 338654 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 391154 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 790796 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 790796 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1175842 26416883 ~ 26417879 (-) False smdt1b
TU10417 other upstream 158938 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 158938 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 478804 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 648284 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 795195 28391039 ~ 28392053 (-) True G7508

Expression Profile