RNA id: TU10421


Basic Information

Item Value
RNA id TU10421
length 3819
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G7105
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27754782 ~ 27939452 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggagccctgcagagtttagattcaaccctgctaaaacacatatattatgtatgtctgaagtacttgattagctggatcaggtgtgtttaattagggttggagctaatctctgcaggacaccggccctccaggaccctGTCGTAGATAGTGAAAACGCAgctttaaatacttaaatataaaagtcctttatttaattgtacagCACTGAAATGTCGATCTATATTCATAATCCAAACTCTAGACAGCCAATTAAGAAAAAGCGACCTCCGCTGGACACATGATGCACAAATAGCGTTAAAAGTGGATAACATTCATTTATTAGTGTCTTTACTATACACCATTTAACTCATAGTAGAATAAACGATTAACCTGGTTCTCCTTTACTAGGACAAACTGGATGGCGTACTCAATAGCAGTGATTAACAGTAAAGCTGGTACTTGTTCTTCAATCACTTTTCTGAGTGGAGGAAATAACAGCATCAGATAATTCAGCATTGACTTATATTGAGTCCGTAGCGATTATAAAacacatccctttcagacagacGGCGTCAGTGAGTTTTAATTGGCTATGCGGGTTCCTGCGGGCGGCGCTCCTGAGATCCGAACAGGAAGTGAGGCGCCAGCcccagtgcattgtgggacTGTCGGCGAGACAGGCACGTGGAGGAGCTCGGTTACAATCAGAGCCGGAACTCGTCACGAGAGATCCATCGATTGAAGGCAACAGAAAGGAGACGAGGGAGGACGGTGAGTTTGTGAGATTCATTAGTTCTGTTGTGTTCCTGAACCGTACCCCCGTGTAGACGGCGTAGGGCGCTTTTGAATTATTGACATTTAACCCCTCGGTAAGTTCATTAGCAGCATGCTGGTCCTGTGCAGCAGAAGAGCAAAGCATCGAGGCAATGTcataaagtcaacatgaaacaacGTTCACGACCCATAATTCTGGAAATTCAGTTTGAGTTTTATCTAAAGAGAGTTGAGTAGATTGCATTGGACACTGCATACCGGACCGGCTATTATTGCTGTCGTTTGCACTATATTAACCAGCGTTAAGTTACTATGTTAACTATTTGCGAAAAATCACCCACATTAGTAGTCTTAAGAATGCCCAGGTAAATATTCGGCCATTGGTTAAGAGTAGTTGTACTTCCCAGGGCCCTGTAAGAgagttttggaaaggtttggaataatTTACAGACTGTAATAATACTGTTAAAAGTAAtactaataatgaaaaataaaaagactgaaCAAATCGGTTTGATTCAAATAAAGCcattaaattaattgattaataaattaaactaaaatatttaaattaagtacCAATTAATTACCGAATTTATACaatctttttatattacaaaataagtctgtttaaagaataaattTGTACTATACTTCAAAACTGATAATGGGGTTctcttttgttatatttttagggTCCGTGGCATCTAAAAGATTGAAAACCCCAATTGGAAAATACTTTTTGGGTCAGAGGatgttattgcattttgattatgaccaaacatgtttgaaataacatgcattGATGACGTAATAAGTGCACAATAATACCATGATTGTGTGTGAAAGTAAACAAAGTCAGttctgatttcatgttgactttaagctCGATATAAATGTGATAATCCAGGCTGAGCTATTATCACACAGAATACAGACAAACGCACGCAAGTTAATAAAGTCAGCATTAAATGTGTATCGTCGTATTGGAAAAAGTATGTTCGCTAAAAACAGACCCGAAATTGTCTTTTAGGCTTCAAACCAGCTGTTCAGTCTGTTCACACTGAAACTAAACCAGTATATCAGTTTCAGTCTCTGTTATTTTGACTTAAATCTGCTCACATTTCTTAAACTGAATAACTATAATCCAGCTCCAGTCTTGAATTCcaattattttgtctttaaatcaGCTCTTCGGTCTTTTCACACTGAAACAGAATCACTATAATCAAGTTTCAGTATCCATATATTATTGATGTGACTTTACATAAGATCTTCAATCTGTTCACACTGAAACCAAATCACTATAATCCAGTTTAAGTCTCCATTTCTCATTATCTTGGCTTTCGATCAGCTTTTCAGTCTGTTCACACTGAAACTGATTTGCCATAATCCTGTTTCAGTAtccatttctgattattttggCTTCGCTCAGCTGTTTACACTGAAAGTGAATTACCGTAATCCTGTTTTAGTatccatttatcattttttcGGCTTTAAATCAGCTCTTCAGTCTGTTCACACTGAAACCAAATCACTATAATCCAGTTTAAGTCTccatttctcattattttgGCTCTTAATACTGCTTTTCAGTCTGTTCACACTGAAACTGAATTGCCGTAATCCTGTTTCAGTATCCATTTATAATTCTTTAGGCTTTAAATCAGCTCTTCAGTCTGTTCACACTGAAACCAAATCACTATAATCCAGTTTAAGTCTccatttctcattattttgGCTTTTGATCAGCTGTTCACATAAACCAAATCACTATAATCCAGTTTAAGTCtccatttctctttattttggcTCTCAATCAGCTTTTCAGTCTGTTCACACTGAAACTGAATTGCCGTAATCCTGTTTCAGTATCCATTCATCATTCTTTCGGCTTTAAATCAGCCTTTAAGTCTGTTCACACTGAAACCAAATTGCCATGATCCAGTTTCAGTATGGCTTCAGAGGAAACTGCGGTTCCTCAGAGGAAGGGGTTGTGGCTTTGGCCGGGTGCTGTGTTTGTCGGGTGGAGGGTGTGAGGGCAGCAGCGGCTGTGGCAGGTTGCTGGGCAGGTCCAGCAGGCCGTGGGGCGGCTGTGTGAAGGACGAGGGCAGAGTCTGGGGCTTCTGCTGCAGGACGGGCAGAGGGAGGAGGCGCTGTAGGACAGAGCGTGAGCCGGCAGCGGCGGCGTGGAGTGAGGACGCATCTGATTCAGAGTCAGTCTGGGCTGCTCACAGTGGAAGGGGTTTGTGGGAGACGGTGCGCtcctACCTGACAGGAAGGGGTTTTTGCTCTTGACCGGTGGGTTTGTGGGAATAAGCGTGTCCAGGTTGACGAGGGAGGCAGCAGTGGGGCCGAGGAACGCTTCGGGGGTTCGGCACTGTCTGGGGGTCACTGCATCCAGAGGAGGCCCAAGACGAGAGAGGTCAAAGGCCTCTGGACTGTCACTTCCCCGTCCGTTCACTTGAACAGCAACCACCAACTCGCCGAACTGATCAGCATCTGAAATGAGAGACGTGCATGAGCTTGGGCTCGGCTCGGAGAGGAAAGCGAGCGTGAAGAGGGTCTGGTTTGGTGTGATGAGGACCTGCAGGGCTCTCGCAGCGAGGGCTGAACACTCGGTTTGGCCCTGCCTGCTCCACCCtaggctcctcctcctccactctAAGCTCCTCCTCCTCTGGGATAGTAAACGGGTCCTTCACACTCGACACTAGAACGAAGTGAACGAAGTGAGGGATCTCTAGAGCtacaaatatttacttatttaaagtgacaattcactaaaaagtcactatcactaatcaaaaatgcCTCTCACTTTGGTTTTTAATGTGAGGTCGCGCTGGGCTCCTCCAGGCTTTTTCATCCATGTTAGAGGTGGAGTTTGAAGGCGGGGCATCCCAGAGGTCAGGCGGTGATTGGTGGGTTCCCCAAGGGTGGGCGGGGCTACTGGAGGAAGGACGAGTTGTCCAGGGACTATCAGCCACGGGGTTACTAGACTTAACTACAGCTGAAACAAACAATCCGATCattaatcataaatatacacacatatattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10490 lncRNA downstream 86803 27847715 ~ 27848178 (-) True G7139
TU10424 lncRNA downstream 189686 27736578 ~ 27745295 (-) True G7106
TU10425 lncRNA downstream 191024 27736991 ~ 27743957 (-) False G7106
TU10265 lncRNA downstream 286695 27647927 ~ 27648286 (-) True G7014
TU10263 lncRNA downstream 288256 27646023 ~ 27646725 (-) True G7012
TU10523 lncRNA upstream 17373 27956825 ~ 27957999 (-) True G7156
TU10453 lncRNA upstream 21122 27960574 ~ 28001479 (-) False G7125
TU10524 lncRNA upstream 22463 27961915 ~ 27964634 (-) True G7157
TU10548 lncRNA upstream 134465 28073917 ~ 28074306 (-) False LOC122349330
TU10557 lncRNA upstream 170230 28109682 ~ 28114927 (-) True G7182
XM_043245253.1 mRNA downstream 44405 27887819 ~ 27890576 (-) True LOC122349272
XM_043250498.1 mRNA downstream 131932 27794470 ~ 27803049 (-) True LOC122352815
XM_043250545.1 mRNA downstream 169975 27759218 ~ 27765006 (-) False LOC122352823
XM_043245266.1 mRNA upstream 1291 27940743 ~ 27942269 (-) True LOC122349282
XM_043250806.1 mRNA upstream 35828 27975280 ~ 27978821 (-) True LOC122352989
XM_043250423.1 mRNA upstream 39226 27978678 ~ 27986215 (-) True LOC122352779
XM_043250640.1 mRNA upstream 56959 27996411 ~ 27997642 (-) True LOC122352890
XM_043245297.1 mRNA upstream 59902 27999354 ~ 28026817 (-) True LOC122349305
XR_006250838.1 other downstream 679914 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 732414 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 1132056 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 1132056 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1517102 26416883 ~ 26417879 (-) False smdt1b
TU10496 other upstream 135196 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 304676 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 451587 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 466730 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 584253 28523705 ~ 28525551 (-) True G7527

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000219_00181306_00181563.mRNA True 1103 mRNA 0.40 1 CI01000219 180706 ~ 181808 (-)