RNA id: TU10425


Basic Information

Item Value
RNA id TU10425
length 3149
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G7106
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27736578 ~ 27745295 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCTCCCACACAACAGCCTCAGACCAGAAATAGACGGTGTGTAAATGCTCCAGTAGGCCTTCAGCTCCAGTAGTATTCAGCTTAACAGGAACacttttgacacacacacacacacacacacacacgctgaagATAACACGCCGACAGAAGCACGCGCATCCTCTGCAGGGTCAACGAGGAAGACGAACGAGTGTCGCTTACCTGCAGCATCTCCCGGAGCCGCCGCGATCCGCTACACCGACACCGACCCGCGGACACGGACACGGACCCGGAGAGCGAGCGGAGGACACACCGAGCGCCCTGCCGTCGAGGCGTGCGACGAAAACCGCGCGGATGCTGCAGTGCTTCCAGTGATGTGGGTGTCGGTCCAGCCGTTGTTCTCCTGAAGGCCCAGCGAGTGTCTCAGTCTCACAGACTCACGCACCAAACCGTCCAGCAGCTCCCTCCATAActgcacactgcacacacacatcatcatcatcatcatgctCTTCATCAcgaggcgtgtgtgtgtgtgtgtgtgcgtctcacCTGACGTCCCGAGCCGTCACAGGTGTGCTGTGTATCTGCGGCCGCTGCAGCTCCAGGATCAGCGTGTTAAAGCGGTTCAGACTCGTCTCTCTgctctcgctgtctctctcaGACCCGGACGACAGCACCTAGTGGACAAAACACACACCCCGAGTTTACCTAAACAACATTTACTCCCACTCATGACACACTGGACCTAAACGACTGTCTTTCTTCAGTCTGACGTTTAGCAGTGACAGCCAGTGGAGCTGGTTTTTGTCTTTCACTGTCTTAAGTTCGGTCTGGCCGTCCCTAAAAGCTAGCATGCAGCTTAAAGTCCCCCTCTAGTGAAAAGCAAGTCTTCACTTTGTTCATTTGTCTATGTGgtgttttaatatgcttttaaacaaacCCTGTGCCAGTCCATTGATCCCTAAACCTCGAATCACAAACTTGGCTGCATTTTTCAAACTTAAAGGCATTTTGACACAGCATTGTCAAGTAAGTAACTTTAATGAGTTTTACAGTATCACTGTAGATGTCTGCTACTAAACACTTAATGGACCAGGAGGCCCTGGCTGAGTGGAGGCGGGGCTAATCTGCATATTCATTGATGTGAATGGGGTACCTGTCCGAGTGTGGTCAGAGACAGATCCCAGGGCGGCGTCCCTCGTGACCCCTTGACCTGCTCCCATAAGCCCCGCAGCGCCTCCACAGGCTCGCGCCGGTACTGCAGCTGCCGAACACAACCACAACCGTAAGCTGCCAGAACAACATGTTTCTGCCGCATTCATTTAGCGAGGAGGGTCTGTCAGTTCCAGATTCAATAAGGGTGTTCTCCGGTGGGAACACGAGAGACCGACACATGCTGAGCTGCAGGAGAGCCATGTTCTGGCCTAAATTACACGACTCAAGCAATTATCCGCTTAATGGAGCTGATTATCGCTATTTGTGTGCGTTTACCCAGAGCGAAGGCTAGAAGCTAAAGTTCGTGCACGTCGTAGTCTGCAGAAGACCTCGTCCTTCCTGCTTAcgaatatcaaaaataataaaagcttgGAAAACAAACATAACCCGGCAAATATAACGCGCGGCTCCTTTATCCACTAACCTGGCCGGATGACTTTGTTATTACTTCCTTTCAAATTCAAGATGATTGTTATTGTGGTTATGATGTAATGCTTTAAGGTGCAAATATTACCCAAAGAGAAGCAGGAAACAGCATTATGTTCATTATAgtgattaaatgtaatcatcTTCTGGGGTAAAATGCTCCACGGGGctgttttgtaattatatatgctTATAACGCCGAGGAGACTCTTTTCATGGAGCTGTTATTCGGGGCTGATGAGGATCTCAAGGTTTTCTGGGTAAATCGCTGGAGTCTGACTCACGGCTCGTTGAAAGCGCTTCAGTTTCTTTCCGTACAGTATTTAATGACACTTGATATCGGTACATTATGTTGTCTTATGAAAACACTCATTTATTTCTTGTACAAGCGTGTACATCGCAGCTTCGGTGTAAAGCACTGAAAGGGACCACAAGCCATgaagcattaaaatgatttcagtacgtgtttttatataattttgcagggttttagcaatgcattttactcCTTATCATGTAATACACTTatcatgcttttataaaataaaaaaactattatgaaGCACAGACATGAATATTATGTATTACAgtcaaatattacatattatatttttaaatgtatagactatattattatgtgtgtgtgtatataaacacatatataccgAAATTATATAAgtttatgatattaataatgtgttttattcctttatataatatatatatatatatatatataatatatatgatatttttttaaaaaattgttacaacatttatgaaaatgtttttttaaataattattttatgaatatatgcgtgtgtgtgtgtgtgtgtgatcacgTACGTGAGGGTTGAGTGTGTTGAACAGCTCCTCGTCTGTGATGTAGAGGTCAGCAGGAGAACTGGGCCGCTCTGGAGTATGAACTCCTCTCAGCAGATCCCTGACCATCTGActgcacagagacacacacgccTTCTGCTCCAGCTCcttctgctcacacacacacacacacacacacacagcatccttcagtgttttcactggatgaaatgacacacacacacacacacacgcacacacctcCAGTGCAGCTCTCTGCTGGGCGCCGTTGTCCCGCTCTAAAGCCACGCCCCTCAGAGTGACCCGCAGCGAGGCTCCGCCCATCAGCACCGGGTGTGTGTTCAGACGCCAGGACTCGCTCACGATGCCCGCAGACGCGCTCTTGAAGACGAAGCTGATGTGTTTAGTGCTGCCGGGCAGAATCACCGCTGTGTGCAGAACATCGTGAGAGCATCCAGAAAACACTGATAATAGTCAGAAGTGAGCAGCAGGTCAGAGTGAAGGATCATGGGACAGCAGCTAGTAAAGAGGAGTCAGTCAATCAATCCTGCGCTCatgtttaacattatttatctatttttgcattttgtctgTACACTTCTTGGATTTGTGtgtaaagttttgaaaaagagaagcaaacttttaaaaatgtgtaagcacattttttactgtattaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10265 lncRNA downstream 88705 27647927 ~ 27648286 (-) True G7014
TU10263 lncRNA downstream 90266 27646023 ~ 27646725 (-) True G7012
TU10258 lncRNA downstream 141147 27593721 ~ 27595844 (-) True G7010
TU10257 lncRNA downstream 144541 27591373 ~ 27592450 (-) True G7009
TU10248 lncRNA downstream 238248 27497894 ~ 27498743 (-) True G7000
TU10451 lncRNA upstream 37156 27781113 ~ 27961298 (-) True G7125
TU10461 lncRNA upstream 46844 27790801 ~ 27972210 (-) True G7128
TU10488 lncRNA upstream 99721 27843678 ~ 28010247 (-) True G7138
TU10490 lncRNA upstream 103758 27847715 ~ 27848178 (-) True G7139
TU10493 lncRNA upstream 147944 27891901 ~ 28073544 (-) False LOC122349330
XM_043250613.1 mRNA downstream 10089 27724178 ~ 27726902 (-) True si:dkey-27j5.5
XM_043228661.1 mRNA downstream 103217 27604178 ~ 27633774 (-) True gcgrb
XM_043238102.1 mRNA downstream 295229 27438436 ~ 27441762 (-) False LOC122344130
XM_043238101.1 mRNA downstream 295991 27438436 ~ 27441000 (-) True LOC122344130
XM_043238106.1 mRNA downstream 298712 27431730 ~ 27438279 (-) True LOC122344204
XM_043250537.1 mRNA upstream 15261 27759218 ~ 27765006 (-) False LOC122352823
XM_043250528.1 mRNA upstream 15261 27759218 ~ 27765006 (-) False LOC122352823
XM_043250551.1 mRNA upstream 15261 27759218 ~ 27765006 (-) False LOC122352823
XM_043250570.1 mRNA upstream 15261 27759218 ~ 27765006 (-) False LOC122352823
XM_043250561.1 mRNA upstream 15261 27759218 ~ 27765006 (-) False LOC122352823
XR_006250838.1 other downstream 481924 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 534424 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 934066 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 934066 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1319112 26416883 ~ 26417879 (-) False smdt1b
TU10417 other upstream 10825 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 10825 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 330691 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 500171 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 647082 28391039 ~ 28392053 (-) True G7508

Expression Profile