RNA id: TU10461



Basic Information


Item Value
RNA id TU10461
length 680
lncRNA type read_through
GC content 0.33
exon number 2
gene id G7128
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27790801 ~ 27972210 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGAGTGTTTTATTCCAGACTAAATCTGAGTCCAgggaacagacacacacacacacacacacacacacacacacacacaatgcactcaaaCTCACTCGTAAACACATGAACACAGTCCAGACGTCAGTCAGAAGAATTGACCGCTCAATAACTATAAACAAAGCTTTAAAGAAAAGCAGCGTCCATCGTCTCGCGGGCAGCGAGAGCTCATCTGACGGATCCCAGCGTTCCCAAACGCTCTCCGTACGGCTTTCAGACGGTCTGTAACCCAAAACAGCCATCCATCTGAAAAACCTGCCAAAGCTCACTCGGGCCTcgtttcaccccaaaatcaacaCTAACGAAGAAGAAACgtggaaaaacaaatataaaataaataaataaattgtgacaTTATTCTCTGGACAATTTAAAATTCCCATgtcttatattatttaaatccaGCACAAATGCAGCCATTACATGCAACTATTTCactatttaaatgtctttttactcatatttaaaaaaaaattatatatatttgtaattataaattacattcaatttaatttaatttaaatcaacatgaatatatttataaaaataacaaaaatatttataataataataattattattatttcactaatgtttatgtaaattaaacattgaaataattacatttgtataCATAACGGC

Function


GO:

id name namespace
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0061061 muscle structure development biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10424 lncRNA downstream 45506 27736578 ~ 27745295 (-) True G7106
TU10425 lncRNA downstream 46844 27736991 ~ 27743957 (-) False G7106
TU10265 lncRNA downstream 142515 27647927 ~ 27648286 (-) True G7014
TU10263 lncRNA downstream 144076 27646023 ~ 27646725 (-) True G7012
TU10258 lncRNA downstream 194957 27593721 ~ 27595844 (-) True G7010
TU10548 lncRNA upstream 101707 28073917 ~ 28074306 (-) False LOC122349330
TU10557 lncRNA upstream 137472 28109682 ~ 28114927 (-) True G7182
TU10636 lncRNA upstream 250046 28222256 ~ 28223230 (-) False nxnl1
TU10641 lncRNA upstream 266646 28238856 ~ 28239695 (-) True G7238
TU11036 lncRNA upstream 292187 28264397 ~ 28285334 (-) True G7480
XM_043250551.1 mRNA downstream 25795 27759218 ~ 27765006 (-) False LOC122352823
XM_043250806.1 mRNA upstream 3070 27975280 ~ 27978821 (-) True LOC122352989
XM_043250423.1 mRNA upstream 6468 27978678 ~ 27986215 (-) True LOC122352779
XM_043250640.1 mRNA upstream 24201 27996411 ~ 27997642 (-) True LOC122352890
XM_043245297.1 mRNA upstream 27144 27999354 ~ 28026817 (-) True LOC122349305
XM_043250448.1 mRNA upstream 55940 28028150 ~ 28034318 (-) True LOC122352793
XR_006250838.1 other downstream 535734 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 588234 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 987876 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 987876 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1372922 26416883 ~ 26417879 (-) False smdt1b
TU10496 other upstream 102438 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 271918 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 418829 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 433972 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 551495 28523705 ~ 28525551 (-) True G7527

Expression Profile