RNA id: TU10493



Basic Information


Item Value
RNA id TU10493
length 985
lncRNA type read_through
GC content 0.39
exon number 3
gene id LOC122349330
representative False

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27891901 ~ 28076645 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGTATGCAACAGTCCAACATCACAAAACCAAACCGACGAAGAAAGCGGAGGAGAAGGAAAACCAGTACGGAAACATCAGGATTCACCAGCCGGCTGCTGCCGTGAGGCTATCAGATGTGGAAACTGTCGACGAGCTCTCTGTGATATACAGCCGAGTCAAATGAACTACAGCCTGCGTTTAGACATTGATCTGGACCCCTGGGAAAAGGAAAAGCCACATATATTGgctgaatatgaaaaaatgttaaagccTAAAGGCATTCAATTGTGTGTCATCGTAAAGCTAAACTCAAAATAATACACCTAGTTGGAATTACTGCCTTGTGAGCTTCACTAAAcgctattaaattaaaataacatattacatGTTTGTTGGGTTACTGTTAATATTCGGTTGATACATGgtctaatacaataaaatgagcAAACAGGAATGACGTGTGTTTtgcataattacatataaatgagAATAAGGAACAATGATCGATTATTTAAAGTATACAGGGATGGGAATAACAGATTAATTAAATGACGTTACTGACAGGACGCAAGTACAACAACCtacatttcaatgttttttgcatttaatagcAATTTTTGCATTCCTTTTGAAGATCTTTTGTGAGCACAtaaaactgcacaaaaaaatatgatattatgtTTTAACTGAACGCATAAAGAAAACTCGTCAAGGACGTTCAAAGTTAACTTCTCTGTCTGCGGTCATAGTTACGACATCCAGCCTTACTCAACATATGTTTCAGAATTCTTCAGAAAAGGCTTTCTACAAGATATTTTTGGCTTGAAACTCTTTGACTTATCCCTGAACATCTGTTCAATTCTAATACATGCAAAAGCAAGCAAAACTGTAAATGATTCATAAAGTCTGGCAATAAATCTGCCGTTTACTTAAGCATTTTGTGCTTAattgtaaatgcataaaatttgTATTGGTTGATTTATTGCGTTGCAGAAGTATTAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10490 lncRNA downstream 43723 27847715 ~ 27848178 (-) True G7139
TU10424 lncRNA downstream 146606 27736578 ~ 27745295 (-) True G7106
TU10425 lncRNA downstream 147944 27736991 ~ 27743957 (-) False G7106
TU10265 lncRNA downstream 243615 27647927 ~ 27648286 (-) True G7014
TU10263 lncRNA downstream 245176 27646023 ~ 27646725 (-) True G7012
TU10548 lncRNA upstream 373 28073917 ~ 28074306 (-) False LOC122349330
TU10557 lncRNA upstream 36138 28109682 ~ 28114927 (-) True G7182
TU10636 lncRNA upstream 148712 28222256 ~ 28223230 (-) False nxnl1
TU10641 lncRNA upstream 165312 28238856 ~ 28239695 (-) True G7238
TU11036 lncRNA upstream 190853 28264397 ~ 28285334 (-) True G7480
XM_043245253.1 mRNA downstream 1325 27887819 ~ 27890576 (-) True LOC122349272
XM_043250498.1 mRNA downstream 88852 27794470 ~ 27803049 (-) True LOC122352815
XM_043250561.1 mRNA downstream 126895 27759218 ~ 27765006 (-) False LOC122352823
XM_043242481.1 mRNA upstream 113179 28186723 ~ 28187938 (-) True LOC122347290
XM_043242487.1 mRNA upstream 118162 28191706 ~ 28192763 (-) True LOC122347302
XM_043246520.1 mRNA upstream 144738 28218282 ~ 28220347 (-) True LOC122350202
XM_043249779.1 mRNA upstream 147355 28220899 ~ 28223247 (-) True nxnl1
XM_043245377.1 mRNA upstream 198025 28271569 ~ 28273549 (-) True LOC122349362
XR_006250838.1 other downstream 636834 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 689334 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 1088976 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 1088976 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1474022 26416883 ~ 26417879 (-) False smdt1b
TU10496 other upstream 1104 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 170584 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 317495 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 332638 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 450161 28523705 ~ 28525551 (-) True G7527

Expression Profile