RNA id: XM_043245336.1


Basic Information

Item Value
RNA id XM_043245336.1
length 3301
RNA type mRNA
GC content 0.41
exon number 16
gene id LOC122349330
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27891901 ~ 28076645 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cTGACCATGATAACAAGAAGTTTCCCTTTTACActgacagttgtttttttttctttttaaaaattgtttcaatCAATTCTTGTGAAAtagttgtgtattttatttatttactgagcCTTAATTATCGTAAGTGGTTTCGTCTGGGGTTGTTCCTATCTTGATTTCATAAAGTCAGACTTTAAAAAGAGGAAGGTACGAAtgtaaaacagcagaaaaacagTTGCAGCTTGCATTTGCAGCTCACTCTGCTGAAATCTATTGGCTAACACTACAACACGTGATGTCATTGATCATGGTTCCTCCTCTTTCCCTGGTGTTTCTGCTCATAATTCCAGaaGTTTATGGGCTGGAGAGTTGGTCTGTGAGATACAGTTCTTCACACATCTGTGCTCTAAAACACTCATCAGTGATAATGAGATGCACTTATACATACCCTCCTGAACATCAGATCAAGAAAGTGTTCtggaccaaaacaaaaaacaaaaatcctgaTGAAGAGTTTCCAGATCTGTCTGAGGACCCTGAATACAGTCAGAGGTTTCAGTATCtgggagataaagagaagaGCTGCACCATGAGACTgagtcatgtgacacagaaagaTGAACACGAGTACTGTTTCAGATTCACTACTGATGAAGATAAATGGATTGGTCATCCAGGAGTGACTCTTACTGTTTTAGaTCTTCAGGTGGAGTCTcctgagagagtgacagagggAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGCGCTCTGACTGACAGAGCAACATTCATCTGGTACAGAAACTCACAGCCATTAActgagagaagagacagaaacaatataCTCCTGCTGCAGTCAGTCAGAAGAGAGGATGCAGGCAGATATAGCTGTGCTCTACAGGAACACACTTACATCTCTCCTGAGGTTTATCTCAATGTCACGTGTGAGTATGTTCTACAAAGTTTTcttccattGAGAATCAAAGCTCATCTGTTGGATCTGGACAGAGTTTCAGTGCACTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCAACACGGATCTCAGAGATCAGATGCTGTTTCTGTCACAGGACATGTCCTCTAATGTAACTGAGAGGGATGTTCACGTGTCTGAATCAGCCTTTTGGATGATGCACCATATGCCAgcatttcattcagaaaacacAGAAGAGACGTCACCGAGACACCCAGGAGGTCCAGTATGCAACAGTCCAACATCACAAAACCAAACCGACGAAGAAAGCGGAGGAGAAGGAAAACCAGTACGGAAACATCAGGATTCACCAGCCGGCTGCTGCCGTGAGattatgtattatttgtgtGAATATAAGATTAATATTGGTATTGTACAACCCACTGACTTGCTGAAGACGTGTGTTTATGTACTAATGTCAGTGAGAATGTCTCTTCCTCTTGCTCTGGCGTTTCTGCTCATGATTTACGGAGTTTATGGCCAATGTGATTGGGGTTTGAGTTATGGCTCTTCACGCATCTGCGCACTAGTGGGGTCAACAGTGACAATCTACTGTAACTATACATACCCTCCTGAACATCAGATCAGAGAAGCAAACTggaccaaaacaaatgaatgctaTCAAGATCTCTTAACGGACCCAGAATACAGTCAGAGGTTTAAGTATctgggagataaagagaaaaacTGCACCATGAGACTgagtcatgtgacacagaaagaTGAAGACAAGTACTATTTCAGATTCATCACTGATCAGGAAAAATGGCTTGGTCTTCCAGGAGTGACTCTTACTGTGACAGaTCTTCAGGTGGAGTCTcctgagagagtgacagagggAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGCGCTCTGACTGACAGAGCAACATTCATCTGGTACAGAAACTCACAGCCATTAActgagagaagagacagaaacaatataCTCCTGCTGCAGTCAGTCAGAAGAGAGGATGCAGGCAGATATAGCTGTGCTCTACAGGAACACACTTACATCTCTCCTGAGGTTTATCTCAATGTCACGTACCCACCCAGGAACGTCTCGGTGTTCATAAATGAATCTGGTGAAATagtggagggagattcagtgactctgatctgcagcagtgattcaaacccacctgcagaAATCAGCTGGTTTAAAGGAAGAACACTTGTTAGATCTGGAAGAATCTACAGCATCTCAAAGATCAGATCTGATCACAGTGGAGAATACAAGTGCAGGTCCAGAAATAAACATGGAAAGAAATACTCTGAAGCTGTGACTTTAAACGTCATATATGCACCCAGGAACGTCTCAGTGTTCATGAATGGATCTGGTGAAATagtggagggagattcagtgactctgatctgcagcactgattcaaacccacctgcTCTGAACTTCTTCTGGTTTAAGGAGAATCAAAGCTCATCTGTTGGATCTGGACAGAGTTTCAGTGCACTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCAACACGGATCTCTGAGATCAGACACTGCTACTGTCACAGTTCACAGAAGTGATGGTAGGACTGTGTTCCAAGTTACATTGGTATCTGGAGTATTATTCATCAtcgttttactttttataatTCTGagaaaaatgatgaaaagaaGAACTGCAATACATGAGTACGAGaATGATGATCTCAGTCTAAACAGATATACTACCCTCGACCCCAGGTCCAGATCTTCTGATCAGTACATGACACTCACAacaaCCCATCCCCCGACCGCTGCTCAGCAGTCAAGCTCGTCCTAATATGAGAGTCAGTCAGTAAcCACACAGCAAGCTGCAAGATGAAGCCACTTGTGTGTCATCGCTGGACACCCACATCACAACGCTTGAAGAAAACACTTGACATTCTTCAGTGAACTTCctcaaagcatttttataaattatgttcGGTAAATGATCGCTTTACGTAATTAAGTTCGATTGTTGAGCAAAATGATCGAATTATCTAATGAGCTTTTATAAGAagattgaatacattttatctGTGCATTAAAGCGTCGATGTAACTGCAGTTtccctttttaaatataatattaatatactaatatgTATACTAATACATTTCGAAAGAGTACATTTGATGATATTTTGaactcatttattattaaatggtaTTGTATTATTCACCTTGTTTCAAGTCTTTCCTTTGTACTTATGTGTTTGACCAGTGTTCAAAAAAGCCAATAATTATAAGAACAAATCGATTCTGCAGAGAAATATTAGAGGGTATTGTAAAATGGTATAGTGTGGGGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10488 lncRNA downstream 55800 27843678 ~ 28010247 (-) True G7138
TU10453 lncRNA downstream 64568 27960574 ~ 28001479 (-) False G7125
TU10461 lncRNA downstream 93837 27790801 ~ 27972210 (-) True G7128
TU10456 lncRNA downstream 94548 27924414 ~ 27971499 (-) True G7127
TU10524 lncRNA downstream 101413 27961915 ~ 27964634 (-) True G7157
TU10557 lncRNA upstream 33037 28109682 ~ 28114927 (-) True G7182
TU10636 lncRNA upstream 145611 28222256 ~ 28223230 (-) False nxnl1
TU10641 lncRNA upstream 162211 28238856 ~ 28239695 (-) True G7238
TU11036 lncRNA upstream 187752 28264397 ~ 28285334 (-) True G7480
TU11054 lncRNA upstream 232259 28308904 ~ 28803891 (-) True G7491
XM_043250471.1 mRNA downstream 3957 28057106 ~ 28062090 (-) True LOC122352802
XM_043245320.1 mRNA downstream 13547 28050085 ~ 28052500 (-) True LOC122349325
XM_043245309.1 mRNA downstream 19136 28045169 ~ 28046911 (-) True LOC122349314
XM_043250829.1 mRNA downstream 20874 28043818 ~ 28045173 (-) True LOC122353000
XM_043250448.1 mRNA downstream 31729 28028150 ~ 28034318 (-) True LOC122352793
XM_043242481.1 mRNA upstream 110078 28186723 ~ 28187938 (-) True LOC122347290
XM_043242487.1 mRNA upstream 115061 28191706 ~ 28192763 (-) True LOC122347302
XM_043246520.1 mRNA upstream 141637 28218282 ~ 28220347 (-) True LOC122350202
XM_043249779.1 mRNA upstream 144254 28220899 ~ 28223247 (-) True nxnl1
XM_043245377.1 mRNA upstream 194924 28271569 ~ 28273549 (-) True LOC122349362
TU10417 other downstream 126595 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 126595 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 810980 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 863480 27197905 ~ 27202567 (-) False LOC122344379
TU10046 other downstream 1263122 26802170 ~ 26802925 (-) False c1h19orf53
TU11020 other upstream 167483 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 314394 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 329537 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 447060 28523705 ~ 28525551 (-) True G7527
TU11178 other upstream 973098 29049743 ~ 29128775 (-) False G7563

Expression Profile