RNA id: TU10557


Basic Information

Item Value
RNA id TU10557
length 517
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G7182
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28109682 ~ 28114927 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGttcacatcatttatttttgcatttatttgcatttgcatgttAGTAAGATTAAAGTCTGTTAAAGTTTATTAAGATCTATTAACGTTACAGATTAGACTTTAGTTAAACTCAGCTTTGCCATAAATGtgtcaaaaacatatttcaaacataaaaaaaaccttgcaaaaACAAGCTTCGACAGTATGTTATGTATGTTTGATCTCTGAATATATCTGGCCGTCGTTTGTCTTGGTGTTTTGTAGATGAGTCACTGTTGAGTAGATCATTTCTGTTCTTTTGTCTGATGCTGGTTCAGGAAGATTCAATATGACATACTCATCACAGTCCGTATCTGTCACCTGATTGGTCGAGTGAGTGTAACCAGAGTTTGAATCTGGCTGCTGATTGGTTACAGATGCATAAACAACAGAGACGTGTGGGCGGGAGCTGAGATGTGATGCAGGCGTCTGATTGGACGAAGATGCTGCATTGATGACATCACTGTTTGGAATCTCCTCGTAAGTACGCTCAGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10548 lncRNA downstream 35376 28073917 ~ 28074306 (-) False LOC122349330
TU10493 lncRNA downstream 36138 27891901 ~ 28073544 (-) False LOC122349330
TU10488 lncRNA downstream 99435 27843678 ~ 28010247 (-) True G7138
TU10453 lncRNA downstream 108203 27960574 ~ 28001479 (-) False G7125
TU10461 lncRNA downstream 137472 27790801 ~ 27972210 (-) True G7128
TU10636 lncRNA upstream 107329 28222256 ~ 28223230 (-) False nxnl1
TU10641 lncRNA upstream 123929 28238856 ~ 28239695 (-) True G7238
TU11036 lncRNA upstream 149470 28264397 ~ 28285334 (-) True G7480
TU11054 lncRNA upstream 193977 28308904 ~ 28803891 (-) True G7491
TU11059 lncRNA upstream 196197 28311124 ~ 28747639 (-) True G7492
XM_043245336.1 mRNA downstream 33037 28066047 ~ 28076645 (-) True LOC122349330
XM_043250471.1 mRNA downstream 47592 28057106 ~ 28062090 (-) True LOC122352802
XM_043245320.1 mRNA downstream 57182 28050085 ~ 28052500 (-) True LOC122349325
XM_043245309.1 mRNA downstream 62771 28045169 ~ 28046911 (-) True LOC122349314
XM_043250829.1 mRNA downstream 64509 28043818 ~ 28045173 (-) True LOC122353000
XM_043242481.1 mRNA upstream 71796 28186723 ~ 28187938 (-) True LOC122347290
XM_043242487.1 mRNA upstream 76779 28191706 ~ 28192763 (-) True LOC122347302
XM_043246520.1 mRNA upstream 103355 28218282 ~ 28220347 (-) True LOC122350202
XM_043249779.1 mRNA upstream 105972 28220899 ~ 28223247 (-) True nxnl1
XM_043245377.1 mRNA upstream 156642 28271569 ~ 28273549 (-) True LOC122349362
TU10496 other downstream 33238 28074648 ~ 28076444 (-) False LOC122349330
TU10417 other downstream 170230 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 170230 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 854615 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 907115 27197905 ~ 27202567 (-) False LOC122344379
TU11020 other upstream 129201 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 276112 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 291255 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 408778 28523705 ~ 28525551 (-) True G7527
TU11178 other upstream 934816 29049743 ~ 29128775 (-) False G7563

Expression Profile