RNA id: TU11059



Basic Information


Item Value
RNA id TU11059
length 916
lncRNA type read_through
GC content 0.39
exon number 3
gene id G7492
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28311124 ~ 28747639 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCTGATTCTACTAAAGTGAAACACGAAAGGTTTGGATAAAGTCCACTGAGCTTGTTTCAGcacttttgttccttttttccCTCAAACTTACAGTTTGATCTTTGGATAATGAAAGTGTACATTATATTATCGCTCATTATCAATGTTGTCATTCCTGCAGTTTACATGCATCATGTCTTTGTCTACGGCACACTGAAGAAAGGTCAGCCTAACCACtacttaataaaaaacactgcTAACGGTCAGGCTGAGTTCGTCGCCCACGCTCAAACTGTAGAGCGATACCCGCTCGTGATCGCCACCGATAACAACTACCCCTTCCTGCTCGATGTGCCAGGGAAAGGCCAGCACGTCCAGGAGAAATCTACTGCGTAGACCAGAAGATGCTGGACTTCCTGGACCAGTTTGAAGAATGTCCTGAGTTATACCAGCGCCAAAAGGTCAAGTTGGAGGTGCAGGATTGGGATGGTGAAGGAAAAAACGCACTGAAGACGGGAAGATTCGAAGAAGCATTTGTGTACAGCAAGAAAACATATGAACCTGAGTGGCTTAAGAAACCAACATATGAGAGTTATGATACGAACGGTGGTCATGGACTGAAATATCATGAGGACATAAACCCATGAGTAATGATTGTACAGAAACTGCTTAGCAGGGTCCAAAATTGCCATTTTATCAACCCTTACGAAAAACAAGTTTATTCAAGTGTCCTATTAGtatacttcttttaaaataaaaatagtataaaagtatacttttagtcTGCTTTTTACACACTTCTTCGAAATGGGCTTTTTGTATGTCTcagaaatatacttaaaatgatttttaagtaTCCTTGACTAGGGGTGCTAGTACACATTTTctggactgaaaaaaaaaaaacattcgaTTATGGTTAACTAATAATTTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU11036 lncRNA downstream 25790 28264397 ~ 28285334 (-) True G7480
TU10641 lncRNA downstream 71429 28238856 ~ 28239695 (-) True G7238
TU10636 lncRNA downstream 87894 28222256 ~ 28223230 (-) False nxnl1
TU10557 lncRNA downstream 196197 28109682 ~ 28114927 (-) True G7182
TU10548 lncRNA downstream 236818 28073917 ~ 28074306 (-) False LOC122349330
TU11142 lncRNA upstream 25715 28773354 ~ 28774166 (-) True G7547
TU11145 lncRNA upstream 42827 28790466 ~ 28800856 (-) True G7550
TU11146 lncRNA upstream 45005 28792644 ~ 28801665 (-) True G7551
TU11154 lncRNA upstream 196358 28943997 ~ 28944618 (-) False LOC122324333
TU11205 lncRNA upstream 224255 28971894 ~ 28981118 (-) True G7579
XM_043261700.1 mRNA downstream 32515 28273718 ~ 28278609 (-) True LOC122360767
XM_043261654.1 mRNA downstream 33489 28273718 ~ 28277635 (-) False LOC122360767
XM_043245377.1 mRNA downstream 37575 28271569 ~ 28273549 (-) True LOC122349362
XM_043249779.1 mRNA downstream 87877 28220899 ~ 28223247 (-) True nxnl1
XM_043246520.1 mRNA downstream 90777 28218282 ~ 28220347 (-) True LOC122350202
XM_043254680.1 mRNA upstream 61573 28809212 ~ 28841535 (-) False LOC122355940
XM_043254526.1 mRNA upstream 61573 28809212 ~ 28841517 (-) False LOC122355940
XM_043254605.1 mRNA upstream 61574 28809213 ~ 28841535 (-) False LOC122355940
XM_043254759.1 mRNA upstream 61574 28809213 ~ 28840716 (-) True LOC122355940
XM_043254493.1 mRNA upstream 61575 28809214 ~ 28841535 (-) False LOC122355940
TU11020 other downstream 62601 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 234680 28074648 ~ 28076444 (-) False LOC122349330
TU10417 other downstream 371672 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 371672 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 1056057 27241224 ~ 27255067 (-) False LOC122343833
TU11178 other upstream 302104 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 302104 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 358675 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 379132 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 379132 29126771 ~ 29128775 (-) False G7563

Expression Profile