RNA id: TU11106


Basic Information

Item Value
RNA id TU11106
length 1277
RNA type TUCP
GC content 0.35
exon number 4
gene id G7527
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28523705 ~ 28525551 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGGACATACcatatatgaaattaaatattttgtattggtGATGAATTTTCTATTCTTCTGTCAGATGAGCTCTTTGAGCATATTTTGTCCACCACTGCTGACAATCTGAAGAAGTCCAGAAATATCTTAAACAGGATCCTCAGAAGAAAACTGCCAAAATTTGTTGGAGAAGCTCGTCTGACCATTAGCATGTCAAAGGAGGAGCTGACAAAAACATGGAAGGCAACAGTAGAGAACTACAAATCTACAGACCCCACTGTTTCTCTGAACACTGAAAATTTACCAGTTTATGTGGTTGATCTGGATCATGGAATGAAGGACAAAAACCCCATTGAAAAGGTCTATTTCTACAGCAAGAGAAAACCCAATAAAGCTGCTCCCATTAAAGATTATCAGTTGTCCAGTTTCCTGCCAAGGAGGTTTAATGAAGAGCTGGTCAGAGTTTACTACAAACAATCTGATGAGGATAAGAAGGGGGAGAAGAAAAAGGTggaggaggctgagaagtgcTTTCAGATGTGGTGTGCCTCCAATTTTGGATTCAAATAGGCAGCTGAAAAATCCAGTAGTTTATTAGAATGCttttgctctttgtttttctggttATTATAATTCAGTTATAGCAGTCAAAGActgcaaaatattataatttcaagtctcaagagcccaactaaagtAAACACTGATCACTGTAAtggtaactaaaaaaaatgtgattttcttcCTTGGTGATTCTTCTTGTTATCATCAGGTGTCTTCATTAATGGACAATCAAAACTTACCTCATTAACTTTAACACCGCTTCAGCAAACTGTCCCTATCCCCAAAGATGGAAAATAGTGACAAAGATTATTGAGCATCAGTGATGAACACCTGATGTTGTAGAGATTTACAGAAGATCAGATggtgatgttttatttgttgaaatgaATTAGTTGTGCTCTTGAcctatgactttttgtgttagATCTCTTTCTGTAACACTGCATGTTCTGTTGATTTATGGTGGCATTTgtttaatagtaatttttttgtagttcagTAACAGCTGAATGCCAGTGTAATTTTAGCCAGATAAAGTGAtaaagtgtacttgttttttaaaaataaatacttgatGATGGTTCTTCAGGCTGAATAGCgcttcattcatatttaataaattcatcAATTCTTTCATATGGTTGAATGGTGATAGTGTGAAAATGTTGATCTTTGGATATTTATATTCGCTAAAGATTCCTGTTCATCAAAGTGTTGTTTAAAGGTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247505.1 lncRNA downstream 34196 28488581 ~ 28489509 (-) True LOC122326719
TU11100 lncRNA downstream 92077 28431323 ~ 28431628 (-) True G7521
TU11096 lncRNA downstream 106134 28414952 ~ 28417571 (-) True LOC122326209
XR_006247450.1 lncRNA downstream 106169 28415443 ~ 28417536 (-) False LOC122326209
TU11095 lncRNA downstream 113397 28408242 ~ 28410308 (-) True G7516
TU11120 lncRNA upstream 145370 28670921 ~ 28672634 (-) True G7535
TU11130 lncRNA upstream 217893 28743444 ~ 28793591 (-) False G7541
TU11132 lncRNA upstream 217893 28743444 ~ 28784099 (-) False G7541
TU11133 lncRNA upstream 217893 28743444 ~ 28807706 (-) True G7541
TU11142 lncRNA upstream 247803 28773354 ~ 28774166 (-) True G7547
XM_043245543.1 mRNA downstream 17167 28496270 ~ 28506538 (-) True LOC122349482
XM_043245530.1 mRNA downstream 27558 28493696 ~ 28496147 (-) True LOC122349476
XM_043245516.1 mRNA downstream 35203 28486768 ~ 28488502 (-) True LOC122349470
XM_043254998.1 mRNA downstream 140830 28376999 ~ 28382875 (-) True LOC122356343
XM_043262004.1 mRNA downstream 199689 28321180 ~ 28324016 (-) False LOC122360989
XM_043255903.1 mRNA upstream 60266 28585817 ~ 28611362 (-) False LOC122356751
XM_043255970.1 mRNA upstream 60266 28585817 ~ 28596121 (-) False LOC122356751
XM_043255835.1 mRNA upstream 60266 28585817 ~ 28596121 (-) True LOC122356751
XM_043256051.1 mRNA upstream 64387 28589938 ~ 28596121 (-) False LOC122356751
XM_043245565.1 mRNA upstream 72467 28598018 ~ 28603208 (-) True LOC122349500
TU11094 other downstream 77114 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 131652 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 275182 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 447261 28074648 ~ 28076444 (-) False LOC122349330
TU10417 other downstream 584253 27754782 ~ 27939452 (-) False G7105
TU11178 other upstream 524192 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 524192 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 580763 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 601220 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 601220 29126771 ~ 29128775 (-) False G7563

Expression Profile