RNA id: TU11133


Basic Information

Item Value
RNA id TU11133
length 680
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G7541
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28743444 ~ 28807706 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCAATCTTACACGGTGACAATGAGGAATCAAACACTCTAATCCCAGCGTAGAGGGGTTCGGTGAATGTGGTGttgaatgtgtgtaagtgtgtgagtgtgtgtgtgAATCATAAATTCTGTATGTGTCTCTGTTGATCCTCACAAGAGGTTGTTAAATCTGACACAGAGACACTGAAGCTTGAGGATAAACCCCAAACCCAGCGTAGAGGGGTTCGGTGAATGTGGTGttgaatgtgtgtaagtgtgtgagtgtgtgtgtgtcagagacgctgtagaaggacagagagccGGCCGACCAGTCCAGATAAACTCCTACTCTATTAGAGCGGGATGAAGGGCCAAATACgtctttgttattattattgtaccaGACAGTATAAGTTGTATCAGAACAGTACATACTCCAGGACATTTCATTGAGACCAAACCAACTGTCAATCCCACTTTTCCTGTTGATTCCTTTATATGACACCGCTACATGACCCGAGCCTTCCCATTTaacctcccagtaacagcgtccagtGAGACTCTCTCTACACAGAACCTGCTCCTGGTTCTcgaatctgtctggatgatcaggatacggcTGATCTTTCagacatgttgtttttttgtagtcTTCAGACAGGATGAGtcgagtgtgtgctgtgtttggatccattGTGAGATCACAGGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11120 lncRNA downstream 70810 28670921 ~ 28672634 (-) True G7535
XR_006247505.1 lncRNA downstream 253935 28488581 ~ 28489509 (-) True LOC122326719
TU11100 lncRNA downstream 311816 28431323 ~ 28431628 (-) True G7521
TU11096 lncRNA downstream 325873 28414952 ~ 28417571 (-) True LOC122326209
XR_006247450.1 lncRNA downstream 325908 28415443 ~ 28417536 (-) False LOC122326209
TU11154 lncRNA upstream 136291 28943997 ~ 28944618 (-) False LOC122324333
TU11205 lncRNA upstream 164188 28971894 ~ 28981118 (-) True G7579
TU11218 lncRNA upstream 207959 29015665 ~ 29017156 (-) True G7591
TU11223 lncRNA upstream 260276 29067982 ~ 29134568 (-) False LOC122362981
TU11231 lncRNA upstream 260276 29067982 ~ 29152545 (-) False LOC122362981
XM_043264597.1 mRNA downstream 66619 28674433 ~ 28676825 (-) True LOC122362864
XM_043255379.1 mRNA downstream 80198 28654009 ~ 28663246 (-) True LOC122356533
XM_043255722.1 mRNA downstream 91261 28645661 ~ 28652183 (-) True LOC122356692
XM_043256174.1 mRNA downstream 99947 28634924 ~ 28643497 (-) True LOC122356986
XM_043262968.1 mRNA downstream 116652 28615819 ~ 28626792 (-) True LOC122361856
XM_043254680.1 mRNA upstream 1506 28809212 ~ 28841535 (-) False LOC122355940
XM_043254526.1 mRNA upstream 1506 28809212 ~ 28841517 (-) False LOC122355940
XM_043254605.1 mRNA upstream 1507 28809213 ~ 28841535 (-) False LOC122355940
XM_043254759.1 mRNA upstream 1507 28809213 ~ 28840716 (-) True LOC122355940
XM_043254493.1 mRNA upstream 1508 28809214 ~ 28841535 (-) False LOC122355940
TU11106 other downstream 217893 28523705 ~ 28525551 (-) True G7527
TU11094 other downstream 296853 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 351391 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 494921 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 667000 28074648 ~ 28076444 (-) False LOC122349330
TU11178 other upstream 242037 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 242037 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 298608 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 319065 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 319065 29126771 ~ 29128775 (-) False G7563

Expression Profile