RNA id: XM_043252980.1


Basic Information

Item Value
RNA id XM_043252980.1
length 5917
RNA type mRNA
GC content 0.51
exon number 39
gene id LOC122354733
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29411107 ~ 29434213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTTCTCTGTCCCCTGACGCCCTCGTCACGCTGCTGAGTTGCAAGGCACAGAGCAACCCGACCACCAGCGCAGAGGCGTGGAAGCTTTTCTTCCAGAAAGTGGCCGGAGTTCTGGAGGAGGCTATGTCAGCGTACTCCAACAAAAGCCTCAGTGACCCTCAGCCTGACTCCCGTGTTCTCGATGCCATTGGAGAGGTGAAAGTCAACAACTTCAGCCCCACACAACTGACAGATGTCCGCTTCATTGCCGACTGGTTCCAGGGACGGCTGAGGCCATTCTTGCCAGCAGTCTCCAGGGACTTCCTGTCCTGCCTTAGCGGCAAGAACTTCAGTTGCGCAACCTACCAAGTTGTGGTGCAGGCTCTCAGTCATCAAGCGTCCCTCATGGACGTGAGGCAACAACGGCTCGTCTTCAGCGATTTTGTCCATCCCTTCCTCTCGAGAGATGACCTAACAGATCCTGCCTGTCTTACCAAAACTACGAGCAGCGCTGACTGGCTGGAGAAGAACTTTGGCAACTTCTCCGTCTACGCGAGCTTGGAGGATTTGAAGACGCTGAATGCAAATTTCTCCAGCTTTGATTCGTTGGGGCTGCTGAGCCCTAGCCAAGTAGCTGAACTGATCCTGAGCTCCGGAGCACTGAACAACACCAATCAGATTAACGCTGTGTTCGACCACCTGGAGGAAGGCGAAGCTTTCAAGAACGTGGAGGAGTTTCTAACGGAGCTGAACGCATCTCCTGAGATTCCCGATATCACCCCCGCTGTGAGAGACGTGATGATGAACCGAACCTTTGTAATCATTGAACTGAAGCTCCAGGAATTTGTGGCTCCTGACTGGAAAGTGTGGTTCACCGAGCTGCTCATCCCTGTCCTGCCCAGTTTCACAGCAGAAATGCTGCTTAAGGTCACGGCCAACATTAACTGCACCAACTATTATGTGATTGTTAAAGGGCTTAATGTGGCTTATGTACAAATGCCTGTCAAAATAAGAGAGGAGGTTGCTGTAAATTTGGTAGTTTACCTCGAACAGTCTAAGCAGCAGATCAGTCAGCCAGcctgtAAACAGGGCATCCAAAATGATACTGACTGGCTGGTGTTGAACCTCGGTCAGTTTTTCACCTATGTGCCTTATTCTGACTTGGCAGAATTCAACATTTCTAGGGACACCATGTTAAGTTCTCTAACTGGTGAACAGAAGGTGGAGCGAATATTGACACCAAGTCTGGTGGAGGATGAGTCTGCTGTTAGAGAAGTGTTTGGATCAGTTGTAAATTCTCCAAACCAGAACCAGTTGGATGAATTCTTTGAGAAATTTATCAAGATGTCTGCAGAGAGAAACGTGTTGAGCATCAGCACCGCTGTGAGCAGCATCATTCTGAACATGACGTTGATGGATCTGGAGAAAAAGTTTGAAAGCTTCCAGCCGCAGACCTTTGCTTTATGGTTCCAGACGTACCTACCCATTTTCCTCCTTGGGATTGGTCCGGATAGCCTTTCTGTCATCCCCATGACCATCAGCTGCGATTCTTACAGAGAAATCGTGAAAGGCTGTGATGATGTTTTCAGCGGTCTCACACAGATTCAGACCAAATATGTCTACAGTTTCACACGAGAATATCTCTCCCATCAACCCAGTCGagGAAACTCCTGTGTGCAGAGTACTAACAGTGACTCTGACTGGCTGCTGAAAAACTTCGCAAAGTTCCGCATCATTGCCAACTTCAGCGACTTCATCAACCTGAAGAGAGACTTTAATGGGGTCAAGGCTGCAGAGTTTCTGACTCAGTCCCAGCTGGCCGAGCTTTGCTCTGACCCGTCTCGACTCAGCGGACCCCAAGACGTTCAGACTGTCATGAGTGTGCTTCAAACACCGCAGCTTTCAGAGTTCTTTGATGCTCTTTCTCCAAACATCCAAGCGAATGAAGCGGGCTACTCTGCCGGGGTGAAGCGGGTCTTCCTGCAGACGGTGCTGGAGCGAGGCGGTCTGGCGTCTGCTTCAGTCAGTGACTCAGACCTGTCGGTCTGGCTCACGGTTCGACTCAGACCACTGCTGTCTGTCCTGAGCTCAGCGGACGTCACAGTGTATTTCAGCACGCTCAGGGCTCGAGGCTGCAGCGTCCAGCAGGAGGCTGTCAGTGTGCTGGACTCTCAAAGAACGGCTCTGGACAACAACACACAGCGTCAGATCTATAACAACATCCAACAACTACTCacagACGCTCCTCTTCGCTGTTATGTGCGTGGCAGCTTCTACCTCTTCCTGAAGTCCTTCTTCCTCCAGTTTGGGTTTCCAGACCTCAGCACCTTCCAGTCTCTGATGCCCGGGGACAGAAGGCCTGAGCTGCTGAGCTCCATCTCTACTGCCGAACTGAGCGAGTTCCTAAACGCTCCTCAGAGTCTGGGGAACGGGTCGGGGCTCTGCGATCTGCTCAGAGCATACAACCAGACCGCCCAGTATCTGGAGACGgAGCCGCTGGGGCCCGTGGGTTTGGCCCGGCAGGTGTTGGCCTGCGTCTGGCCCCAGGTTCTGAAGCTGGAGATCCGGTCTGAAGTGGATCAGTGGTTCAAGCTCCGGCTCGTCAGATACCTGCCTCTTCTCAGCTCTGAGCTCCTCAGCCCCGCACAGCTCCACAGCGCCACCTGTCTGTCCTACAGCAAACTgcTTTCAGTTCTTGGAAACAACTACAACTTCTCTAGAACTGACTTCACCCCCGAGTATGTTTATGGCTCTGTGAAGGTGTACCTCACAAATGGTGGCTCACCTCGCTGCTATAATGCCTCGGATCCTCAGCTGAACTCCACTAACTGGCTTGTGAGCTACATTGGTGTCTTCATCAGATACGTCAATCTGTCTGACCTCAATTCCTTTGTGTCGTCAGACCAGATTGGTGTGTTCCTGGAAAACCCAGAGAACCTTCAGCTGCTCAACAGCACGGTGACCAGTGTCCAGTCCAGCGTAGCCAGTTACTACATAACACAGCTGTACATCTGGAACCCGTTCTTCAACCCCATCAGtctcCCAGGCCAGTTCTTGTGTGGAATCCCTTCCCTTGCGTTCGAGTCTCTGGGAACAGAAGAAAGTTTGGTGCTCATCCAGAGGATCAATGTGTTCTGTAATGGATCTGAGAGCTCTGAGATCACATCTGCTCTGGCAGCCAATCTCCCGTCGCTCTCCTCCTCCACCATCCAGCTGCTGGGCAGTCAGAGTGTGGGCCTGACGGAGGCTCAGATAGGCTCTGCCTCCTCTGATGTCATTAAGGGCGCACTCTCCACCCTCAGCGCCGTGGACGGCTGGAATCAGGGCCAAGCCAACGCAGTCATACAGACCCTCATTGAGTCCAACTTTCCAATGAACACCGGCTCCTCGCTGCTGTCTCTGGGGACACTGGTCAAGGGCGTTCCGGCGGAGACCATCTCCAACATCGAACCCTCTGAGCTCCTGGCCATATCCCAAAATCCAACATTCATCAGCAACATCCTCTCAGCGCCAGAAATCGTGCAGCTGGTTTATGTCATGAAGATCGTGTCCATAGATGAGACTAAAGTCATCGAGAATGTTCCAGATGCATTGGCAGGGTCGATCCCTCGCATCTTGCTGATCCCTCAGGAGTCTGTGAACGTCACCTTGATCAACCAGAAGCAGTGGACACAGGAGCAGGCTGTGATGCTGTTCGGCTCCGTGGCGAGTGTCAGCACAGACACAGAGGAGCTGTCTGAGGAGCTGCTGCAGGGCTTCACCTGTACGTCTGTCCGGACGCTGGCCGAGCCCAAGGTCAAGCAGCTGGTCAGAGCCTGCAGATGGCGGCCGGGCCGGCAGAAGGTCCAGCTGAAGGAGAGCCAGCTGATGTGTATGTACAACTACATGAAAGACGAGACTTCCACAAGCTTCACAGATTTACCTTCGGACATGCTGCTTTACTACAACTATGAGAAGGTGGAGAAGGCGAGCTGCCGCTCGTATTTCAGCGCGGTGGGAACAGCAGACTACTCCATTCTTTCCGGCGTCCTCGACAAACAGAAGACTCTGTTCAACAACGCACAGAACTGTCTGGGTATTTCGGGTCAGAGGTTAAGCAAAGATCACGTGGAGGTTCTGGCTAACCTGACCTGCACCCTTGATCCTGTCTACATCCAAAACTCAGATCCAACCATCATCGATAAACTGAAGAACTGCCACGACCTCTCAGACGCTCAAATCAGCGCTGTGCAAACCCTGCTACTCTCGGGAGAAACCATCTATGGGAACTCTTCTGGTTGGGGTCAACAGACGCTGGAGCAGCTCAATACTCTCCCGCTGTACTTCACTGGGGACTTCTGGAACCTCTTCAGCCCGactGTGAAGAAGAAGTACATGAAGGTGTTCATGCCGTTTCTGAGGACGAGGAACACAGAGAAGCCCAAACTAAAGAAACTCTTTAAAAACTGCAACACTGAGTTAAGCGCTCGAAGCAGAATGAGCCGCTCTacagACTGCACCGCAGGAAACATCACAGAGGCCATGATCGCAGACGCCTCCTTCCCCTTCGGCTACACCGCGGCCCAGTTCGACGCCTGTCTGACCCCCAAGGTCCTCCGAGACAACCTGGCCGCCGTCTCAGAGAAAGTGGACGACAACGACTTCCAGAGAATCATTCTAAACAAGCTGGAGCAGGTGTACCCGGCCGGACTCCCAGACGGCCCTCTGCAGCTGCTGTCCTCTGTCTCACGGCAGGCCACGCTGGACGAGATCAGGACCTGGAGCGTGACCAGCATCGACACGCTGACCGCTCTCATGAACAGAAAGAACGGAGAATGGGACAAAGACAAGagTAACGAGGTGATCCTCAGGTATCTGAGTGTGGCCGGTCATACTTTAGGCACTAATGAGCTGAACATCATCGGCTCCAACATCTGCTCTCTGAACATCTCTACACTTCAGAGCATTAAAGCGGGAGACCTGAGTAATGCAGAAGTTCTGGATCTGTCCTCGTGCTCGCTCGAGCAGAAATCAGTTCTGTACAGCACTGCTAACTCCTCTTTCAGAGCTCAACGCAGCAACGGCCCTATTTACTTCCACCTCATCAGCCCCTACCtcggtggtGCTCCGGTTGAGGACGTGAGGGCTTTGGCATCTTCTAACATCACTCTGGACATCAGCACCTTCAGGAGTCTCAGCATTCCTGTAGTGAAGgctcTGAGCGTGTCGGACGTGCGCTCTCTCATGGGCTCAGCCGTGGCCGATCTGAAGGTGTTTGAGAACGACTCTGTGGTCCAGGCCTGGATCTCCTCACAGCGGCAGTCTCAGTTAGACACGCTGAACATCGGTCTGTCGGGAGGCCAAGCCGATCCGAGCACGTCTTCACCTGTCAACGTCCTGAACAACAACAGCACCGTTTACAGCAGCGGCTCGCAGGCGACGGCTCCCGGCCAATCAGCTGCAGCCACCGTCACCGTACAGGgatcTGCACCAGCTCTTCGTCTCGGTCCAGGCCTGTGGCTCCTCGTGTCCTGTGTGTGGCTTTTGACCTTCACGTGACATCATACCACATCCGTAATCAAAAACTCATTAAATCATCATCAGAAATCAGTTAGAATAACATAAGTGCTTCATTAAATCAATAACGtcagaaataaatcaatattagaTGAATATCAGTACTTAATATTAGTTGATttttgtgtctctctgtgtctttatAATCATGTTTGTTctgaagttatttttaatttaatctttaatgattttataacAAATCTGTGAACTTATTTAAAACTTGTatagtgtaataaaaaatattattaaaatacaatataacaaaaatgaagGAAATCACAATTGTGTTAAATTAATACGATAGAATATCAAATTATTTTGTGCCTTAATAGTAgaatattattttcacattcattgttactgtaaagaaaaaattctcaa

Function

GO: NA

KEGG:

id description
K20733 MSLN; mesothelin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11316 lncRNA downstream 63478 29347222 ~ 29347629 (-) True G7637
TU11303 lncRNA downstream 92881 29317581 ~ 29318226 (-) True G7629
TU11194 lncRNA downstream 108218 29301807 ~ 29302889 (-) False G7569
TU11294 lncRNA downstream 117697 29292626 ~ 29293410 (-) True G7624
TU11289 lncRNA downstream 119764 29290761 ~ 29291343 (-) True G7620
XR_006247601.1 lncRNA upstream 99 29426833 ~ 29427169 (-) True LOC122327126
XR_006247510.1 lncRNA upstream 552 29427286 ~ 29427802 (-) True LOC122326770
TU11375 lncRNA upstream 2955 29429689 ~ 29462368 (-) False G7648
TU11390 lncRNA upstream 2955 29429689 ~ 29473561 (-) False G7648
XR_006247528.1 lncRNA upstream 3682 29430416 ~ 29430757 (-) True LOC122326869
XM_043252743.1 mRNA downstream 8729 29366477 ~ 29402378 (-) True mslnb
XM_043252815.1 mRNA downstream 14530 29366477 ~ 29396577 (-) False mslnb
XM_043259965.1 mRNA downstream 70536 29335596 ~ 29340571 (-) True LOC122359579
XM_043259600.1 mRNA downstream 84569 29320391 ~ 29326538 (-) True LOC122359260
XM_043257616.1 mRNA downstream 121614 29284247 ~ 29289493 (-) False LOC122357818
XM_043245627.1 mRNA upstream 43610 29470344 ~ 29472287 (-) True LOC122349539
XM_043245639.1 mRNA upstream 45566 29472300 ~ 29476081 (-) True LOC122349546
XM_043253878.1 mRNA upstream 75771 29502505 ~ 29518876 (-) True zmp:0000001082
XM_043245650.1 mRNA upstream 93160 29519894 ~ 29523243 (-) True wfikkn1
XM_043260095.1 mRNA upstream 163229 29589963 ~ 29594827 (-) False ears2
TU11193 other downstream 100509 29301807 ~ 29310598 (-) True G7569
TU11179 other downstream 282332 29049743 ~ 29128775 (-) True G7563
TU11364 other upstream 19217 29445951 ~ 29461849 (-) False G7648
TU11407 other upstream 26025 29452759 ~ 29475388 (-) True G7655
TU11359 other upstream 30781 29457515 ~ 29473561 (-) True G7648
TU11367 other upstream 30781 29457515 ~ 29473561 (-) False G7648
TU11370 other upstream 37519 29464253 ~ 29471799 (-) False G7648

Expression Profile