RNA id: TU11360


Basic Information

Item Value
RNA id TU11360
length 1014
RNA type TUCP
GC content 0.54
exon number 7
gene id G7648
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29426098 ~ 29476338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCCTGCCTCCTCCATCGAGTCAGCTGTGCGACTTTGCCATCTCTGAATATGCCTGCTCTTCGGTCGCATCTTCTCTGTCCCCTGACGCCCTCGTCACGCTGCTGAGTTGCAAGGCACAGAGCAACCCGACCACCAGCGCAGAGGCGTGGAAGCTTTTCTTCCAGAAAGTGGCCGGAGTTCTGGAGGAGGCTCTGTCAGCGTACTCCAACAAAAGCCTCGGTGACCCTCAGCCTGACTCCCGTGTTCTCGATGCCATTGGAGAGGTGAAAGTCAACAACTTCAGCGCCGCACAACTGACAGATGTCCGCTTCATTGCCGACTGGTTCCAGGGACGGCTGAGGCCATTCTTGCCAGCAGTCTCCAGGGACTTCCTGTCCTGCCTTAGCGGCAAGAACTTCAGTTGCGCAACCTACCAAGTTGTGGTGCAGGCTCTCAGTCATCAAGCGTCCCTCATGGACGTGAGGCATCAACGGCTCGTCTTCAGCGATTTTGTCCATCCCTTCCTCTCGAGAGATGACCTAACAGATCCTGCCTGTCTTACCAAAACTACGAGCAGCGCTGACTGGCTGGAGAAGAACTTTGGCAACTTCTCCGTCTACGCGAGCTTGGAGGATTTGAAGACGCTGAATGCAAATTTCTCCAGCTTTGATTCGTTGGGGCTGCTGAGCCCTAGCCAAGTAGCTGAACTGATCCTGAGCTCCGGAGCACTGAACAACACCAATCAGATTAACGCTGTGTTCGACCACCTGGAGGAAGGCGAAGCTTTCAAGAACGTGGAGGAGTTTCTAACGGAGCTGAACGCATCTCCTGAGATTCCCGATATCACCCCCGCTGTGAGAGACGTGATGATGAACCGAACCTTTGTAATCATTGAACTGAAGCTCCAGGAATTTGTGGCTCCTGACTGGAAAGTGTGGTTCACCGAGCTGCTCATCCCTGTCCTGCCCAGTTTCACAGCAGAAATGCTGCTTAAGGTCACGGCTCACATCAGCTGCACCAGCTACCAAGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247458.1 lncRNA downstream 599 29466945 ~ 29467695 (-) True LOC122326264
XR_006247472.1 lncRNA downstream 1649 29465935 ~ 29466645 (-) True LOC122326350
TU11409 lncRNA downstream 4222 29463530 ~ 29464072 (-) True G7656
XR_006247477.1 lncRNA downstream 5239 29462380 ~ 29463055 (-) True LOC122326391
TU11381 lncRNA downstream 5926 29426098 ~ 29462368 (-) False G7648
TU11459 lncRNA upstream 23326 29496887 ~ 29500697 (-) True G7683
TU11467 lncRNA upstream 49338 29522899 ~ 29553586 (-) True G7686
TU11448 lncRNA upstream 50634 29524195 ~ 29581127 (-) False G7675
TU11486 lncRNA upstream 74311 29547872 ~ 29549202 (-) True G7694
TU11447 lncRNA upstream 104397 29577958 ~ 29581127 (-) True G7675
XM_043252980.1 mRNA downstream 41560 29411107 ~ 29426734 (-) True LOC122354733
XM_043252743.1 mRNA downstream 65916 29366477 ~ 29402378 (-) True mslnb
XM_043252815.1 mRNA downstream 71717 29366477 ~ 29396577 (-) False mslnb
XM_043259965.1 mRNA downstream 127723 29335596 ~ 29340571 (-) True LOC122359579
XM_043259600.1 mRNA downstream 141756 29320391 ~ 29326538 (-) True LOC122359260
XM_043253878.1 mRNA upstream 28944 29502505 ~ 29518876 (-) True zmp:0000001082
XM_043245650.1 mRNA upstream 46333 29519894 ~ 29523243 (-) True wfikkn1
XM_043260095.1 mRNA upstream 116402 29589963 ~ 29594827 (-) False ears2
XM_043259981.1 mRNA upstream 116402 29589963 ~ 29594825 (-) True ears2
XM_043260020.1 mRNA upstream 116402 29589963 ~ 29594816 (-) False ears2
TU11364 other downstream 6445 29445951 ~ 29461849 (-) False G7648
TU11395 other downstream 34081 29426294 ~ 29434213 (-) False LOC122354733
TU11193 other downstream 157696 29301807 ~ 29310598 (-) True G7569
TU11164 other downstream 339519 29126771 ~ 29128775 (-) False G7563
TU11380 other upstream 1913 29475474 ~ 29476338 (-) False G7648
TU11666 other upstream 718640 30192201 ~ 30197848 (-) True G7816
unassigned_transcript_161 other upstream 884518 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 884834 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 886259 30359820 ~ 30359892 (-) True trnar-ucg_102