RNA id: TU11447


Basic Information

Item Value
RNA id TU11447
length 551
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G7675
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29524195 ~ 29581127 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTACCTTGCTGAAGCCCTCCTTGCTGAGCGTGTCCACGTTCCAGGGCATCTTCTTCTCCTCCCGCCGGTGCTCCTCCATCTTCTTCTCCCAGGCGCGCTCCTCCCGTCTCAGCTGCTTCTCCTCGTCCTGGGCTGAGGTCAGCTGGGCTCTGGACTCAGGGGTGGAGGCTGAGCTGAGCTCCTGAACCCGCCGCTGAGCCTCGGCCAGCTTCCTGCGGCTCTCCGCCAGACCCTTCTCCAGATCCTCGCCCTTCTGCAGGAACGCCTCCATACGCTCCACCCGCGCCTCctGGTGTGTCCAGCGGAACAGGCTCGGTGTGTCGATGTTTGGGTGAGTATCATCTTCATCGTCGGACACCTCGATATGATCCCACACACTGTAATCGATGGTCGTCATGGCGGTCACTCACGCGTCTGCTCCGTTAATCtctgttaatattataaatataagagTTCTTATTGTTATactcctgtgtgtttgtgtctcgcGCACTCGCCGCTCTTTCTGGAACACTCCTTCACTTCCGCCCACAGTGACATCATCACCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11467 lncRNA downstream 24372 29522899 ~ 29553586 (-) True G7686
TU11486 lncRNA downstream 28756 29547872 ~ 29549202 (-) True G7694
TU11459 lncRNA downstream 77261 29496887 ~ 29500697 (-) True G7683
TU11404 lncRNA downstream 103107 29470716 ~ 29474851 (-) True G7654
TU11377 lncRNA downstream 105664 29468294 ~ 29472294 (-) False G7648
TU11571 lncRNA upstream 305153 29886280 ~ 29886672 (-) True G7751
TU11576 lncRNA upstream 333541 29914668 ~ 29915054 (-) True G7755
TU11585 lncRNA upstream 437156 30018283 ~ 30018557 (-) True G7761
TU11590 lncRNA upstream 451443 30032570 ~ 30037959 (-) True G7764
XR_006251747.1 lncRNA upstream 516731 30097858 ~ 30099331 (-) True LOC122351377
XM_043245650.1 mRNA downstream 54715 29519894 ~ 29523243 (-) True wfikkn1
XM_043253878.1 mRNA downstream 59082 29502505 ~ 29518876 (-) True zmp:0000001082
XM_043245639.1 mRNA downstream 101877 29472300 ~ 29476081 (-) True LOC122349546
XM_043245627.1 mRNA downstream 105671 29470344 ~ 29472287 (-) True LOC122349539
XM_043252980.1 mRNA downstream 151224 29411107 ~ 29426734 (-) True LOC122354733
XM_043260095.1 mRNA upstream 8836 29589963 ~ 29594827 (-) False ears2
XM_043259981.1 mRNA upstream 8836 29589963 ~ 29594825 (-) True ears2
XM_043260020.1 mRNA upstream 8836 29589963 ~ 29594816 (-) False ears2
XM_043218492.1 mRNA upstream 205458 29786585 ~ 29792237 (-) True LOC122324192
XM_043258250.1 mRNA upstream 218851 29799978 ~ 29806220 (-) True LOC122358417
TU11380 other downstream 101620 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 102570 29467125 ~ 29475388 (-) False G7655
TU11367 other downstream 104397 29457515 ~ 29473561 (-) False G7648
TU11666 other upstream 611074 30192201 ~ 30197848 (-) True G7816
unassigned_transcript_161 other upstream 776952 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 777268 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 778693 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 779479 30360606 ~ 30360678 (-) True trnaq-uug_10

Expression Profile