RNA id: TU11467


Basic Information

Item Value
RNA id TU11467
length 463
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G7686
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29522899 ~ 29553586 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGAAGAGTTTATTCACGCAGCCAGCAATTACAATCAACTGATCAAATGAAGATCAACATCACGTTACACACCAGAAAATATTTAACCACACCTAAGAAATCACTTAGTGAAACTAGTTAACCTACAAGTTAGTTGAGTTATATCTAGTCAGACAGTGTTTGATTTGTGTTCTCACTGTGAGCCAGTTAATCTTTTTTCTGATTCTCACAGCAAACATCTGATTGAACTGAAGagatctgcacacacacacacacacacacacacacacacacacacacacacacacactcttatagACATTTTCTAGAAATACTGTATGCTTTCACATTTCTGATGAACTTGACAGTGAATTAATCTACAATTAAACACCTCAGAGCGGCAGACATGACCCTTTAACACAacaaacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgttttctcag

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11459 lncRNA downstream 22202 29496887 ~ 29500697 (-) True G7683
TU11404 lncRNA downstream 48048 29470716 ~ 29474851 (-) True G7654
TU11377 lncRNA downstream 50605 29468294 ~ 29472294 (-) False G7648
TU11378 lncRNA downstream 50605 29471885 ~ 29472294 (-) False G7648
TU11405 lncRNA downstream 51351 29467125 ~ 29471548 (-) False G7655
TU11447 lncRNA upstream 24372 29577958 ~ 29581127 (-) True G7675
TU11571 lncRNA upstream 332694 29886280 ~ 29886672 (-) True G7751
TU11576 lncRNA upstream 361082 29914668 ~ 29915054 (-) True G7755
TU11585 lncRNA upstream 464697 30018283 ~ 30018557 (-) True G7761
TU11590 lncRNA upstream 478984 30032570 ~ 30037959 (-) True G7764
XM_043253878.1 mRNA downstream 4023 29502505 ~ 29518876 (-) True zmp:0000001082
XM_043245639.1 mRNA downstream 46818 29472300 ~ 29476081 (-) True LOC122349546
XM_043245627.1 mRNA downstream 50612 29470344 ~ 29472287 (-) True LOC122349539
XM_043252980.1 mRNA downstream 96165 29411107 ~ 29426734 (-) True LOC122354733
XM_043252743.1 mRNA downstream 120521 29366477 ~ 29402378 (-) True mslnb
XM_043260095.1 mRNA upstream 36377 29589963 ~ 29594827 (-) False ears2
XM_043259981.1 mRNA upstream 36377 29589963 ~ 29594825 (-) True ears2
XM_043260020.1 mRNA upstream 36377 29589963 ~ 29594816 (-) False ears2
XM_043218492.1 mRNA upstream 232999 29786585 ~ 29792237 (-) True LOC122324192
XM_043258250.1 mRNA upstream 246392 29799978 ~ 29806220 (-) True LOC122358417
TU11380 other downstream 46561 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 47511 29467125 ~ 29475388 (-) False G7655
TU11367 other downstream 49338 29457515 ~ 29473561 (-) False G7648
TU11666 other upstream 638615 30192201 ~ 30197848 (-) True G7816
unassigned_transcript_161 other upstream 804493 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 804809 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 806234 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 807020 30360606 ~ 30360678 (-) True trnaq-uug_10

Expression Profile