RNA id: TU11486


Basic Information

Item Value
RNA id TU11486
length 907
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G7694
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29547872 ~ 29549202 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagtgaatgtgtgtgggtgtgagtgtgtgaggtcTGTGAGAATGAACGagggtgagagtgtgtgtgagacctgTTTTGCAGTGTAGAGTTTGGCGATGGGCGTCAGAAGTCTCAGCAGGAGTGTGTCTCTGTCACTAGCTCTTCTGTTCTCCTCGCGGCCAAGCAGACGACACACTTCCATCGCAAACAGAAACGCAGCACGAGTCTCCAcctgacagcacacacacacacacacacacacacacgtatgagAGGAGGGTTGCACAACATGCTGATAATACAGTAGTACAGCGAAGCTAAAGCTTAAAAACAGCCGCCGTGCCGCTGAGGTCTAAACTGCAGCACGGTCCCTACGGTGGAACTTACAGAAAGTCACCAGCGACGCGAGTCCAAACAGTTGTACTGTACTCATGACTGAAATGTCTTCACTGTACTCTGTGTAGTAACGTTACAGGCGGTCTACACACTTCCAATGAGAGATCTTGATCATGCAGCAGTTTATCAGAAGAAGAACTTTGGCTTTTCATTGGCTTGAAAACAATCTTCAGAATGACTCTGTTATTTCATCTTGAACACTTACTGCCACCTGCTGGCCGTTTTAAGTCTCCTGATCTAAAAGAaggtgaaagagtgaaatctatgtgctgagaattaactgcctcctGTGatgtgaggcagctagcagacggtcggtttagccggtctgtctgcttcctgacctgggcactagttggtcatgttggagctataagactatatgccatatttctagacagaagagcggcaccaccccaagagggatgaagaccatctcttttcaacaggtcaggtctgccccagaaactaaagcctatgttgttctgcgggcaccacttcttcatccagccattgagacccagcagtctgc

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11459 lncRNA downstream 47175 29496887 ~ 29500697 (-) True G7683
TU11404 lncRNA downstream 73021 29470716 ~ 29474851 (-) True G7654
TU11377 lncRNA downstream 75578 29468294 ~ 29472294 (-) False G7648
TU11447 lncRNA upstream 28756 29577958 ~ 29581127 (-) True G7675
TU11571 lncRNA upstream 337078 29886280 ~ 29886672 (-) True G7751
TU11576 lncRNA upstream 365466 29914668 ~ 29915054 (-) True G7755
TU11585 lncRNA upstream 469081 30018283 ~ 30018557 (-) True G7761
TU11590 lncRNA upstream 483368 30032570 ~ 30037959 (-) True G7764
XM_043245650.1 mRNA downstream 24629 29519894 ~ 29523243 (-) True wfikkn1
XM_043253878.1 mRNA downstream 28996 29502505 ~ 29518876 (-) True zmp:0000001082
XM_043245639.1 mRNA downstream 71791 29472300 ~ 29476081 (-) True LOC122349546
XM_043245627.1 mRNA downstream 75585 29470344 ~ 29472287 (-) True LOC122349539
XM_043252980.1 mRNA downstream 121138 29411107 ~ 29426734 (-) True LOC122354733
XM_043260095.1 mRNA upstream 40761 29589963 ~ 29594827 (-) False ears2
XM_043259981.1 mRNA upstream 40761 29589963 ~ 29594825 (-) True ears2
XM_043260020.1 mRNA upstream 40761 29589963 ~ 29594816 (-) False ears2
XM_043218492.1 mRNA upstream 237383 29786585 ~ 29792237 (-) True LOC122324192
XM_043258250.1 mRNA upstream 250776 29799978 ~ 29806220 (-) True LOC122358417
TU11380 other downstream 71534 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 72484 29467125 ~ 29475388 (-) False G7655
TU11367 other downstream 74311 29457515 ~ 29473561 (-) False G7648
TU11666 other upstream 642999 30192201 ~ 30197848 (-) True G7816
unassigned_transcript_161 other upstream 808877 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 809193 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 810618 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 811404 30360606 ~ 30360678 (-) True trnaq-uug_10

Expression Profile