RNA id: TU11725


Basic Information

Item Value
RNA id TU11725
length 514
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G7864
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30463323 ~ 30523613 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaaactttttaatccAAGCAAACCTTTACCAATACTTTCTGTTTATTGGCTACACATCATACAAACTGGGAATGTATCAAGTATAGTCTATGAAAGTGCAAATGACGATGCAAATGTTAACGGTTATGtttcccaaaataaaacaaaagaaagaaagaaataccaCCACCATAAATGGATGTAAAAATGGTTGTTACTACACACAAtgtcaaatttgtaaaaaaaaaaaaaaaaaaaatgaaataaaacagaaaaacactggcCATCACTTCCAATGCAAAACTTTGTTTgggggagaaaaacaaaactaaatacacaaaactataACCACCAAATCTACATTTATCCCTCATTtcataatgtcaataaaagacACCTCTCTAGGGCCACAGACCTTTCTAACAGTAATGTCATTAAAAGACAGTCAGAACATGGCAACCTGTTCAGTATAATACAAACACGAGGCTGCTGTCAACACGAGCCAAAAACTATtctgtctgaaaaaagaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11674 lncRNA downstream 172286 30290710 ~ 30291037 (-) True G7824
TU11672 lncRNA downstream 178973 30283969 ~ 30284350 (-) True G7822
TU11667 lncRNA downstream 219999 30195990 ~ 30243324 (-) True G7817
TU11654 lncRNA downstream 278714 30176165 ~ 30184609 (-) False G7806
TU11663 lncRNA downstream 285375 30169979 ~ 30177948 (-) True G7813
TU11727 lncRNA upstream 54561 30559250 ~ 30559552 (-) True G7866
TU11736 lncRNA upstream 151767 30656456 ~ 30661467 (-) True G7874
TU11932 lncRNA upstream 338289 30842978 ~ 30843402 (-) True G7988
TU11933 lncRNA upstream 339028 30843717 ~ 30844170 (-) True G7989
TU11965 lncRNA upstream 414856 30919545 ~ 30944969 (-) True G8008
XM_043245788.1 mRNA downstream 39041 30401205 ~ 30424282 (-) True LOC122349663
XM_043245781.1 mRNA downstream 62692 30393908 ~ 30400631 (-) True LOC122349654
XM_043247390.1 mRNA downstream 138458 30323319 ~ 30324865 (-) True LOC122350704
XM_043246511.1 mRNA downstream 141340 30319081 ~ 30321983 (-) True LOC122350179
XM_043247807.1 mRNA downstream 149272 30307963 ~ 30314051 (-) True LOC122350995
XM_043239911.1 mRNA upstream 349347 30854036 ~ 30861383 (-) False gyg2
XM_043239904.1 mRNA upstream 349347 30854036 ~ 30861381 (-) True gyg2
XM_043239920.1 mRNA upstream 349347 30854036 ~ 30861378 (-) False gyg2
XM_043235414.1 mRNA upstream 357690 30862379 ~ 30873365 (-) False cd99
XM_043235405.1 mRNA upstream 357690 30862379 ~ 30873101 (-) False cd99
unassigned_transcript_183 other downstream 76457 30386795 ~ 30386866 (-) True trnap-ugg_2
unassigned_transcript_182 other downstream 77882 30385369 ~ 30385441 (-) True trnap-ugg_1
unassigned_transcript_181 other downstream 78522 30384731 ~ 30384801 (-) True trnae-uuc
unassigned_transcript_180 other downstream 82130 30381121 ~ 30381193 (-) True trnar-ucg_114
unassigned_transcript_179 other downstream 83560 30379691 ~ 30379763 (-) True trnar-ucg_113
TU11729 other upstream 125545 30630234 ~ 30630505 (-) True G7868
unassigned_transcript_184 other upstream 358181 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11966 other upstream 441400 30946089 ~ 30957486 (-) False G8009
TU12079 other upstream 1027380 31532069 ~ 31537416 (-) True G8091
TU12077 other upstream 1045497 31550186 ~ 31554035 (-) True G8089

Expression Profile