RNA id: TU11736


Basic Information

Item Value
RNA id TU11736
length 388
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G7874
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30656456 ~ 30661467 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAACGATTCAGAGGCGGAAGCCGGAGTAGAATCCATATGCAGagttttaatggagacagcaaacaaatccaaacgtaatccaaactcagcgtcaaataatcaggcaaaggttcaaacacaataatcagtccaaTCCGAGTCGTCAAGGCAAGGGGTAATCCAAAGAACAATAGTCaagaaaaaacaggcaataggtcaaaacacgatagaaacagacagataaagaaacgcttggtatgcagtgatgagctggcaatacttcgcaccaggctgttgtttgggcctggttaaaatggccgccaaaagggaagtgggcgtggagaaagcagaggaagagctgacagtcagaactctggggaaggctccctctgctggtgtggcgttaca

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006935 chemotaxis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko04360 Axon guidance
ko05217 Basal cell carcinoma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11727 lncRNA downstream 96904 30559250 ~ 30559552 (-) True G7866
TU11724 lncRNA downstream 132843 30463323 ~ 30523613 (-) True G7864
TU11725 lncRNA downstream 151767 30463323 ~ 30504689 (-) False G7864
TU11674 lncRNA downstream 365419 30290710 ~ 30291037 (-) True G7824
TU11672 lncRNA downstream 372106 30283969 ~ 30284350 (-) True G7822
TU11932 lncRNA upstream 181511 30842978 ~ 30843402 (-) True G7988
TU11933 lncRNA upstream 182250 30843717 ~ 30844170 (-) True G7989
TU11965 lncRNA upstream 258078 30919545 ~ 30944969 (-) True G8008
TU11968 lncRNA upstream 282031 30943498 ~ 30957486 (-) True G8009
TU11964 lncRNA upstream 287380 30948847 ~ 31004114 (-) True G8007
XM_043245788.1 mRNA downstream 232174 30401205 ~ 30424282 (-) True LOC122349663
XM_043245781.1 mRNA downstream 255825 30393908 ~ 30400631 (-) True LOC122349654
XM_043247390.1 mRNA downstream 331591 30323319 ~ 30324865 (-) True LOC122350704
XM_043246511.1 mRNA downstream 334473 30319081 ~ 30321983 (-) True LOC122350179
XM_043247807.1 mRNA downstream 342405 30307963 ~ 30314051 (-) True LOC122350995
XM_043239911.1 mRNA upstream 192569 30854036 ~ 30861383 (-) False gyg2
XM_043239904.1 mRNA upstream 192569 30854036 ~ 30861381 (-) True gyg2
XM_043239920.1 mRNA upstream 192569 30854036 ~ 30861378 (-) False gyg2
XM_043235414.1 mRNA upstream 200912 30862379 ~ 30873365 (-) False cd99
XM_043235405.1 mRNA upstream 200912 30862379 ~ 30873101 (-) False cd99
TU11729 other downstream 25951 30630234 ~ 30630505 (-) True G7868
unassigned_transcript_183 other downstream 269590 30386795 ~ 30386866 (-) True trnap-ugg_2
unassigned_transcript_182 other downstream 271015 30385369 ~ 30385441 (-) True trnap-ugg_1
unassigned_transcript_181 other downstream 271655 30384731 ~ 30384801 (-) True trnae-uuc
unassigned_transcript_180 other downstream 275263 30381121 ~ 30381193 (-) True trnar-ucg_114
unassigned_transcript_184 other upstream 201403 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11966 other upstream 284622 30946089 ~ 30957486 (-) False G8009
TU12079 other upstream 870602 31532069 ~ 31537416 (-) True G8091
TU12077 other upstream 888719 31550186 ~ 31554035 (-) True G8089
TU12112 other upstream 961207 31622674 ~ 31625823 (-) False LOC122349741

Expression Profile