RNA id: TU11965



Basic Information


Item Value
RNA id TU11965
length 324
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G8008
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30919545 ~ 30944969 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCCAAGATCGCCTAAAATGAGCAGAGGGGCTCGAAACAGACTTTTATAAACGTTATCATGAGTGTAAAAGGACAGAAGGGTCTTACTTTGGTGGTTGTGGCCATGGCACCTGCCATCTTCATTTGAGAGTTCATTAGCTTGGTTTGTGTTGACATGGAGGTGACCTTAGAGCTGACGGCATATGTACGCGTTTTCTGTTTCCTCACTTGAACAAGCTGCTTAGCTAAAACTTTGCAGGCGTCTCTGTTCCCAGTCTTTGCCATTTTCTTGATTTCCATCTCCTGAGATCAAGAAAGCAAATAGTAGAAAACAGGAAAGCAAAT

Function


GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU11933 lncRNA downstream 75375 30843717 ~ 30844170 (-) True G7989
TU11932 lncRNA downstream 76143 30842978 ~ 30843402 (-) True G7988
TU11736 lncRNA downstream 258078 30656456 ~ 30661467 (-) True G7874
TU11727 lncRNA downstream 359993 30559250 ~ 30559552 (-) True G7866
TU11724 lncRNA downstream 395932 30463323 ~ 30523613 (-) True G7864
TU11964 lncRNA upstream 3878 30948847 ~ 31004114 (-) True G8007
TU12006 lncRNA upstream 232825 31177794 ~ 31180161 (-) True G8042
TU12021 lncRNA upstream 259058 31204027 ~ 31297841 (-) True G8054
XR_006251612.1 lncRNA upstream 295274 31240243 ~ 31242046 (-) True LOC122350699
TU12051 lncRNA upstream 389641 31334610 ~ 31335142 (-) True G8072
XM_043235414.1 mRNA downstream 46180 30862379 ~ 30873365 (-) False cd99
XM_043235422.1 mRNA downstream 46437 30866438 ~ 30873108 (-) True cd99
XM_043235405.1 mRNA downstream 46444 30862379 ~ 30873101 (-) False cd99
XM_043239911.1 mRNA downstream 58162 30854036 ~ 30861383 (-) False gyg2
XM_043239904.1 mRNA downstream 58164 30854036 ~ 30861381 (-) True gyg2
XM_043236591.1 mRNA upstream 27820 30972789 ~ 30974161 (-) True cldng
XM_043245847.1 mRNA upstream 427527 31372496 ~ 31378539 (-) True LOC122349700
XM_043245858.1 mRNA upstream 439371 31384340 ~ 31393086 (-) True LOC122349710
XM_043236111.1 mRNA upstream 617012 31561981 ~ 31572621 (-) True tacr3l
XM_043236147.1 mRNA upstream 646168 31591137 ~ 31595295 (-) True cldnd1b
unassigned_transcript_184 other downstream 56584 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11729 other downstream 289040 30630234 ~ 30630505 (-) True G7868
unassigned_transcript_183 other downstream 532679 30386795 ~ 30386866 (-) True trnap-ugg_2
unassigned_transcript_182 other downstream 534104 30385369 ~ 30385441 (-) True trnap-ugg_1
unassigned_transcript_181 other downstream 534744 30384731 ~ 30384801 (-) True trnae-uuc
TU11966 other upstream 1120 30946089 ~ 30957486 (-) False G8009
TU12079 other upstream 587100 31532069 ~ 31537416 (-) True G8091
TU12077 other upstream 605217 31550186 ~ 31554035 (-) True G8089
TU12112 other upstream 677705 31622674 ~ 31625823 (-) False LOC122349741
TU12119 other upstream 677705 31622674 ~ 31626415 (-) False LOC122349741

Expression Profile