RNA id: TU12021


Basic Information

Item Value
RNA id TU12021
length 1632
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G8054
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31204027 ~ 31297841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttttaaaaatatttctacaagaatgcattatttaatcgctgtttttgtttttttgttgtttttttttgtcttcaccATTAAATACATCTCAAtgctttccaaaacaaaaagaacaaaaaaaaaaaaagtattgaaatgTGTCTTGCTTCTCTCAATATAAGTACAGCACTCAGCAGACATTTCGCTTTTCCACGTCAGNaaaaaaaaacaaaaaacattttttgctcgATTCTTGCTATAAAAAGAGTAACTTCAAAACTCAGGAAAACTATCACAGAGAGGAttggaggaaagagaaagagagagtccGAGATGGAGAGCGACCATTGGCACAGAGTTATTGAACCAAAATCATGCAAGTTATGTTCCAAAACTGcttcgattaaaaaaaaaaaccccaaaaacaataacaatagcaCCAAATACAGTCATACgtacaaacatacacacgcTCAAATCCAGTTATGAGAGAATATACCATCAGACATTTTGAATGTGACGAAAGCAGCTACGTTTGGTTCCCGAACGTCTCTGTAAGTCAGGAACTTTAAGGAACAGGGTTCATATACATCAAGATCTGTCATATAAGGAAAAGGATGAATCGCTTCAGCGCGTTATTTTACACGGAGCTCTTGTATTTTCAAATTAGGAATgaaacaaaaccacaaacagAGGAGTACTGTGCAGAATATATGCAGTACCGTTTCCCATAGTGCGGTATATAAGCACTGAAACTAGTCTAGATACAGAGTTTGGTTAACAGAGCGTCCTGTACTGGATTCTTAGCCCATCAAACATGCCACTGGTTTGCATATTTTACGTCTTTCTTGTTTGGCAAGGGAGAAAAATAACCAGAGCGGACCGGAACAAGGGCCATTCAAAACCTGAAGGCAAACAATCACGCGTTGGTCATCTCTTTCGTCCGGGCTGTAAAGATTTGCTAGCGTTAATCAGAGCGGCAGGCTCTAAAGACGGGCCCAAGCCCACGAGCAAGAAAACGAGGtggagaataaaacatttggaaTTTCAGGAAGTAAAGAGTATCCTGCCTACCGCATAGCATTATCGTGAATTACTATTGCGGTTCAAGATCTCCGTTGGAAACGCCCCCCCGGAAATCCTGTAATTCCGAAACGCGATTGCGAGAAATTAACAAAACGCTTCACAATTGGTACtaacagtttgtttttgtggCGGCGACGGAAAGGCTTTGCTTTAATATTGAAAAGATTTACTAAGGATTTGCCCCGACGTTGATGAGATGTTCAACACCCCTATTCATTTCTCTTAAACCAATTACAATACNGcattccaaaaatgttttttttttttttttgaatgcgaatattcaaattaatatagcatctttaaataaaagaacGGTTGTTTTTTGGCCTCTAGGGATATcatgaaataaacacaatgaaCTGTTGTCTCTCAACCtaatattattgatttatgtATAACCGGAGCGCCTTGTCACAAGTCTTTTCATGCATTGGTGCTCCCCTGAGGAACACAACTGAAACGTTCATGTACAGAATGTGTGCATAATAATCCTTATACTCTCCCTTtgctttataaacacacacacgcacacacacacacacacacacacacacacacactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12006 lncRNA downstream 23866 31177794 ~ 31180161 (-) True G8042
TU11964 lncRNA downstream 199913 30948847 ~ 31004114 (-) True G8007
TU11968 lncRNA downstream 246541 30943498 ~ 30957486 (-) True G8009
TU11965 lncRNA downstream 259058 30919545 ~ 30944969 (-) True G8008
TU11933 lncRNA downstream 359857 30843717 ~ 30844170 (-) True G7989
TU12051 lncRNA upstream 36769 31334610 ~ 31335142 (-) True G8072
TU12032 lncRNA upstream 56822 31354663 ~ 31478860 (-) True G8063
TU12029 lncRNA upstream 62278 31360119 ~ 31368228 (-) True G8062
TU12030 lncRNA upstream 62278 31360119 ~ 31368228 (-) False G8062
TU12040 lncRNA upstream 167780 31465621 ~ 31467033 (-) True G8066
XM_043236591.1 mRNA downstream 229866 30972789 ~ 30974161 (-) True cldng
XM_043235895.1 mRNA downstream 262301 30936398 ~ 30941726 (-) True creb1a
XM_043235414.1 mRNA downstream 330662 30862379 ~ 30873365 (-) False cd99
XM_043245847.1 mRNA upstream 74655 31372496 ~ 31378539 (-) True LOC122349700
XM_043245858.1 mRNA upstream 86499 31384340 ~ 31393086 (-) True LOC122349710
XM_043236111.1 mRNA upstream 264140 31561981 ~ 31572621 (-) True tacr3l
XM_043236147.1 mRNA upstream 293296 31591137 ~ 31595295 (-) True cldnd1b
XM_043237501.1 mRNA upstream 297990 31595831 ~ 31602441 (-) True glb1
TU11966 other downstream 246541 30946089 ~ 30957486 (-) False G8009
unassigned_transcript_184 other downstream 341066 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11729 other downstream 573522 30630234 ~ 30630505 (-) True G7868
unassigned_transcript_183 other downstream 817161 30386795 ~ 30386866 (-) True trnap-ugg_2
unassigned_transcript_182 other downstream 818586 30385369 ~ 30385441 (-) True trnap-ugg_1
TU12079 other upstream 234228 31532069 ~ 31537416 (-) True G8091
TU12077 other upstream 252345 31550186 ~ 31554035 (-) True G8089
TU12112 other upstream 324833 31622674 ~ 31625823 (-) False LOC122349741
TU12119 other upstream 324833 31622674 ~ 31626415 (-) False LOC122349741
TU12124 other upstream 329129 31626970 ~ 31629972 (-) False LOC122349752

Expression Profile