RNA id: TU12032


Basic Information

Item Value
RNA id TU12032
length 862
lncRNA type read_through
GC content 0.53
exon number 2
gene id G8063
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31354663 ~ 31478860 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACATGAGACGTGAGCGCTATCTAGAAATGACAGTCCACACTGGAGAAATCGTACCAGATACACACCACACAAGGATGCAGCAGAAATCGCGTATCACAAGTAAGCTCAGATTCACTCCGAAACATGATTCATAAAGGTTTCGAAGCTTCTTGAAGCAGTTATTCAAACTCGCCCCTGACTGCCAGATGCTTTAATCAATTCGCCATTACATAAAACGTATAATAATTGCGAATATAATGAAAGCAGGTTAATGCGAGCAGCTCAAAGAATGGTACACCAAGAGTTGTTGTCAGGTGCCGTCTCATTCACCTTGTAACTTTGTGGTGTGTATCTGGTACGATTTTCTCCAGTGTGGACTGTCATTTCTAGATAGCGCTCACGTCTCATGTTCTTGATGATCTGGAGGAGGCCCAGGCTCACTCGGTAGGTCCTGCTGCTGTCGAAGTGTCTCGGGTCGCTGTGTTCAGTCACATACACCCTGTTGAAGATGCCACAGGCGTCTTGACGCACAATAACGCGATCCTTGTTGCTGTCAGGATCGCCGGGGCTGTAACTCGCCCTCACATAAGATGGGAGAGCCTTCGCTCCTCCAGCGTTCAGGTTGCCCACCTCGTAGTACGGGAGATTTTGACGGGGCACAAtatgatcatcatcatcttcaatTCTGTTATAATACCTGTGGAAGCCGAAGTCTCCTTTTTGAGGACTGTAGGAGGAAACAATATTTCCGTTTCTCACGCTGATATATTCCTGAGCGAACCAGTACAGCAGGTTCAGGCCGTGTCTTGGCTGCGGCTGACCGAAGCCTGATTGTTTGAGCTGGGACAGTTCGTTCAGAGTCGACACCATGATGGACGGCT

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0001882 nucleoside binding molecular_function
GO:0001883 purine nucleoside binding molecular_function
GO:0032549 ribonucleoside binding molecular_function
GO:0032550 purine ribonucleoside binding molecular_function
GO:0032561 guanyl ribonucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12051 lncRNA downstream 19521 31334610 ~ 31335142 (-) True G8072
TU12021 lncRNA downstream 56822 31204027 ~ 31297841 (-) True G8054
XR_006251612.1 lncRNA downstream 112617 31240243 ~ 31242046 (-) True LOC122350699
TU12006 lncRNA downstream 174502 31177794 ~ 31180161 (-) True G8042
TU11964 lncRNA downstream 350549 30948847 ~ 31004114 (-) True G8007
TU12069 lncRNA upstream 327 31479187 ~ 31480344 (-) True G8084
TU12055 lncRNA upstream 13437 31492297 ~ 31495910 (-) True G8074
TU12081 lncRNA upstream 69335 31548195 ~ 31548754 (-) True G8093
TU12088 lncRNA upstream 101070 31579930 ~ 31580156 (-) True G8100
TU12089 lncRNA upstream 101878 31580738 ~ 31589790 (-) True G8101
XM_043236591.1 mRNA downstream 380502 30972789 ~ 30974161 (-) True cldng
XM_043235895.1 mRNA downstream 412937 30936398 ~ 30941726 (-) True creb1a
XM_043235414.1 mRNA downstream 481298 30862379 ~ 30873365 (-) False cd99
XM_043236111.1 mRNA upstream 83121 31561981 ~ 31572621 (-) True tacr3l
XM_043236147.1 mRNA upstream 112277 31591137 ~ 31595295 (-) True cldnd1b
XM_043237501.1 mRNA upstream 116971 31595831 ~ 31602441 (-) True glb1
XM_043245889.1 mRNA upstream 144013 31622873 ~ 31626684 (-) True LOC122349741
XM_043245898.1 mRNA upstream 148043 31626903 ~ 31630020 (-) True LOC122349752
TU11966 other downstream 397177 30946089 ~ 30957486 (-) False G8009
unassigned_transcript_184 other downstream 491702 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11729 other downstream 724158 30630234 ~ 30630505 (-) True G7868
unassigned_transcript_183 other downstream 967797 30386795 ~ 30386866 (-) True trnap-ugg_2
unassigned_transcript_182 other downstream 969222 30385369 ~ 30385441 (-) True trnap-ugg_1
TU12079 other upstream 53209 31532069 ~ 31537416 (-) True G8091
TU12077 other upstream 71326 31550186 ~ 31554035 (-) True G8089
TU12112 other upstream 143814 31622674 ~ 31625823 (-) False LOC122349741
TU12119 other upstream 143814 31622674 ~ 31626415 (-) False LOC122349741
TU12124 other upstream 148110 31626970 ~ 31629972 (-) False LOC122349752

Expression Profile