RNA id: TU12040



Basic Information


Item Value
RNA id TU12040
length 894
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G8066
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31465621 ~ 31467033 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CGTGAATAATAACCGAGCGCGCGCGCCGCACAGGCGCAGATCCTTCACGCGCGTGAATAAGacGCAGAATGCCCGACCGAGAACTCTGAACGAACTGGCCCATCTGAGAGAGACCGGGTTCGGTCAGCCGTACTTCAGACACGGGTCTGATTCTGCTCTGGTGGTTTGCTGATGAATGCATTGAGATCGACGACGACGGCAATATGATCGCACTGTGCGACccaaaaacaaagcttttggTTTCCATCCGTTCCATAACTCAGAAGAAATTCTTCCTACAACTGGCCAGTATTATGAAATCGGTAACCTGCACCGACCTGGAGCGATGCCCGATTATGTTACCAAGAATTACAACCCTGATGTACGTGAGAGCAACGCAGACGCGTCGTTGTTTCGGTCAAATCAAGACGGAATAAAACCTCTTTTTCAGATATTTACGTGACGCATCATTTAGGTCAGGGCCGCTTCCGACGAGGACGCCACCTTCCGGATCAGTCAAGGCCTGGTTAGGATCATTCAGAACAAGGCCTGGTCGGACTTCATCAGAGAGGTGAAGGTCCGTTGAGCTCGTGTTACGTGTGCTCCTCATCACGCTTCAGATCAAACGTTCCTGTTCTTACGAAATAAAAGCAAGTGTCTTCCTggaaaacaaaggcactgatagATTTACATGTACATTCAGTCTAGGACCAGGCAATCGGGGTTAATGTATAATGCATTGTGTTCTGTCTTTTACTTTTAcgtttattattcttattattaattgtcTATTTCACAGCACATAACGTAACGTGggtttataaatatgcatgttgGTTATTTCTTGTAAAGCAGCCGGGTGATGCATTTCTGAAGGTCGAAACCCTAAACGAATAAAGTCTGTGGTGAACACGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12029 lncRNA downstream 97393 31360119 ~ 31368228 (-) True G8062
TU12030 lncRNA downstream 97393 31360119 ~ 31368228 (-) False G8062
TU12051 lncRNA downstream 130479 31334610 ~ 31335142 (-) True G8072
TU12021 lncRNA downstream 167780 31204027 ~ 31297841 (-) True G8054
XR_006251612.1 lncRNA downstream 223575 31240243 ~ 31242046 (-) True LOC122350699
TU12072 lncRNA upstream 1262 31468295 ~ 31470517 (-) True G8086
TU12069 lncRNA upstream 12154 31479187 ~ 31480344 (-) True G8084
TU12055 lncRNA upstream 25264 31492297 ~ 31495910 (-) True G8074
TU12081 lncRNA upstream 81162 31548195 ~ 31548754 (-) True G8093
TU12088 lncRNA upstream 112897 31579930 ~ 31580156 (-) True G8100
XM_043245858.1 mRNA downstream 72535 31384340 ~ 31393086 (-) True LOC122349710
XM_043245847.1 mRNA downstream 87082 31372496 ~ 31378539 (-) True LOC122349700
XM_043236591.1 mRNA downstream 491460 30972789 ~ 30974161 (-) True cldng
XM_043235895.1 mRNA downstream 523895 30936398 ~ 30941726 (-) True creb1a
XM_043235414.1 mRNA downstream 592256 30862379 ~ 30873365 (-) False cd99
XM_043236111.1 mRNA upstream 94948 31561981 ~ 31572621 (-) True tacr3l
XM_043236147.1 mRNA upstream 124104 31591137 ~ 31595295 (-) True cldnd1b
XM_043237501.1 mRNA upstream 128798 31595831 ~ 31602441 (-) True glb1
XM_043245889.1 mRNA upstream 155840 31622873 ~ 31626684 (-) True LOC122349741
XM_043245898.1 mRNA upstream 159870 31626903 ~ 31630020 (-) True LOC122349752
TU11966 other downstream 508135 30946089 ~ 30957486 (-) False G8009
unassigned_transcript_184 other downstream 602660 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11729 other downstream 835116 30630234 ~ 30630505 (-) True G7868
unassigned_transcript_183 other downstream 1078755 30386795 ~ 30386866 (-) True trnap-ugg_2
unassigned_transcript_182 other downstream 1080180 30385369 ~ 30385441 (-) True trnap-ugg_1
TU12079 other upstream 65036 31532069 ~ 31537416 (-) True G8091
TU12077 other upstream 83153 31550186 ~ 31554035 (-) True G8089
TU12112 other upstream 155641 31622674 ~ 31625823 (-) False LOC122349741
TU12119 other upstream 155641 31622674 ~ 31626415 (-) False LOC122349741
TU12124 other upstream 159937 31626970 ~ 31629972 (-) False LOC122349752

Expression Profile