RNA id: TU12081


Basic Information

Item Value
RNA id TU12081
length 560
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G8093
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31548195 ~ 31548754 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTGCATCACGAAACTTTGCCTAAACTTTGCTtccattaataacatttaacatcaGCGTGAActttccattccacaaaagACCCATTATAGTGtaggaaaggttttttttagattatataagatgttcttcacactaataataaattcaaaattgattaaaaaacgGTTCTCGTTTTgcattgctgcaaaaaaaagtgaaccTCTAAGGGTATATAGCAAATGATGTTTCTTTGATATCCTAATTGCTTCTTCTACAAGAATAATGCATTCAATGGAGATTTGATCTGACTCTGATCTGCAAGATTTGCCAGATTTGTCTTCCGAGGACAAATATTAGTAATCCTGTGCGTGTGCCTCGGCGAGTTTCACAAGAGTTTCAAAACTGCTTCTCAGACGTGACTCaaatgggtttttattttatagcaatatactctttttaatgatgtttagctataaacaaatttcgggaggagcacgcactgataattaacgcggctggcttctcgtttcctaatcacgcaattatccaaccagagcaagagaagcctactataaatt

Function

GO:

id name namespace
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12055 lncRNA downstream 52285 31492297 ~ 31495910 (-) True G8074
TU12069 lncRNA downstream 67851 31479187 ~ 31480344 (-) True G8084
TU12072 lncRNA downstream 77678 31468295 ~ 31470517 (-) True G8086
TU12040 lncRNA downstream 81162 31465621 ~ 31467033 (-) True G8066
TU12029 lncRNA downstream 179967 31360119 ~ 31368228 (-) True G8062
TU12088 lncRNA upstream 31176 31579930 ~ 31580156 (-) True G8100
TU12089 lncRNA upstream 31984 31580738 ~ 31589790 (-) True G8101
TU12110 lncRNA upstream 73920 31622674 ~ 31625823 (-) False LOC122349741
TU12116 lncRNA upstream 73920 31622674 ~ 31625823 (-) False LOC122349741
TU12118 lncRNA upstream 73920 31622674 ~ 31626415 (-) False LOC122349741
XM_043245858.1 mRNA downstream 155109 31384340 ~ 31393086 (-) True LOC122349710
XM_043245847.1 mRNA downstream 169656 31372496 ~ 31378539 (-) True LOC122349700
XM_043236591.1 mRNA downstream 574034 30972789 ~ 30974161 (-) True cldng
XM_043235895.1 mRNA downstream 606469 30936398 ~ 30941726 (-) True creb1a
XM_043235422.1 mRNA downstream 675087 30866438 ~ 30873108 (-) True cd99
XM_043236111.1 mRNA upstream 13227 31561981 ~ 31572621 (-) True tacr3l
XM_043236147.1 mRNA upstream 42383 31591137 ~ 31595295 (-) True cldnd1b
XM_043237501.1 mRNA upstream 47077 31595831 ~ 31602441 (-) True glb1
XM_043245889.1 mRNA upstream 74119 31622873 ~ 31626684 (-) True LOC122349741
XM_043245898.1 mRNA upstream 78149 31626903 ~ 31630020 (-) True LOC122349752
TU12079 other downstream 10779 31532069 ~ 31537416 (-) True G8091
TU11966 other downstream 590709 30946089 ~ 30957486 (-) False G8009
unassigned_transcript_184 other downstream 685234 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11729 other downstream 917690 30630234 ~ 30630505 (-) True G7868
unassigned_transcript_183 other downstream 1161329 30386795 ~ 30386866 (-) True trnap-ugg_2
TU12077 other upstream 1432 31550186 ~ 31554035 (-) True G8089
TU12112 other upstream 73920 31622674 ~ 31625823 (-) False LOC122349741
TU12119 other upstream 73920 31622674 ~ 31626415 (-) False LOC122349741
TU12124 other upstream 78216 31626970 ~ 31629972 (-) False LOC122349752

Expression Profile