RNA id: TU12116


Basic Information

Item Value
RNA id TU12116
length 2510
lncRNA type sense_over
GC content 0.39
exon number 6
gene id LOC122349741
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31622674 ~ 31626684 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACATTGGGTCCAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGCTTCCACAGTGGGTCCAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGCGTCTACAGTGTCTACAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGAGTCTACAGTGTCTACAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTGCAGCTTCCACATTGGGTCCAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGCTTCCACAGTGGGTCCAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGCGTCTACAGTGTCTACGGCTTCTACTGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGAGTCTACAGTGTCTACAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTGCAGCTTCCACATTGGGTCCAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGCTTCCACAGTGGGTCCAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGCGTCTACAGTGTCTACGGCTTCTACTGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTGCAGAGTCTACAGTGCCTGCAGCTTCTACAGTGTCATCCACTTCTGCTCAGTCTACATCTGCTCAGTCTGCAGCTTCCACAGTGGGTCCAGCTTCTACAGTGTCATCCACATCTGCTCAGTCTACATCTGCTCAGTCTACAACTTCTACGGTATCTACTGCCTCGACAGTGTCATCGACATCTACACAGTCTACAGCTTCTACAGTAACTACAGCCTCTACAAAATCTACAGCAGCTTCTGAACAAACAGCACCTGATGTGCTAACATATCTGGAGTTTAAATCCAGTGACACATTTATAGATGCATTCAGCGATAACACCACTGAGGAGTACAAAAATAGGTCTAACCTTGTCAGGGAACAGCTTGAGCCtgtctacaaaaataaatattcaaacttCAACAGACTGTATGTCCTAGGATTCAGaAAGGGGTCAGTCATCACATCAACACAACTAGCTTTCATTCTTAATCAAAATATTCCATCTGTCCAAGAGATTGCGACAACTCTCGTGACAGCAGTGCAAAACGGAAATGTCAGTTTGTTGAACATAAATCCTCAATCAATTTATGTCAATGGTTCAGcTCCAGCTACCATTGTCACTACTGCAGCAACCATAGCAGCTACAACTTCAGGTGGATTAAAGACTGAATCCAGTCTGCTCCAAGCAACATCCCTCATTATTATGTCTAAGCTGTTGTGGCTTTTCCTATAGATCCCTTAAACATATACCAAACAAATATAAGAGTTCAATGATAAACACTataacatataattaaaaaaccaaatgaatttattatcatttcatgGTATATAGGTACATGATTATTTATTGCAGCACACTCTGAAATAATGGTATAGAGCAATATAAAGATAAGTTTGATTATGcatttttcctcaaaaatataattgtggATATTTGTTTAACAGCAGGCTGTTCTGGGAGGGAGAAGTGGATCTTTTTCCTCATACATTTCCTGAtgtatgcttttaaatgtaaacactgTAATGCTGTTTAACTGTTTTGAGGATAAATACTGGTCatacttatttttcttttttaatctaataacttttaaaatggcaaagttctgtttattttttattatatatatatatatattctaaaatatcttcctttcaTGAAGGGACACTGCAATACTATACATGCTAAACATGACTTTTTGCAATGCAGTGTTCACTGCTCAAATGATTCAACTTTAGtcacctttttttattgtaagtaGGCTTGCATGAAACATTAGTTTGATGAGCTGTATGTTGAAAACTggtaatattttgcattaaaatctaGCAATGTTTGGCATTACACAAGTCTCATGGTCAGCTATTAGTAGTTTAGAGTTATAATTAGAGTTATAATTTATTGTCCTTTGCAGGAACTTGTCTTGGACTCAAAGCTGCAGCAATACACAACATCAATCCAAAACAACACTTTGTTACTacaatttactatttaaaatccCAATAGATACGGGTATAAATGAATTCTTATAGTGATTACTTCAATGGAACTTATAGCGCTTCCCTTATGGTAATAattgaagtaaataaaacatggcTTGAATCACTTACTATTGTTTGCACATTCTAAAAAACCAATGACTCATAAATGAATTGAAGTGATGTATACTCTCTTACACCTATGATTTTAATAGCAATTTTAACAAGCGTACCAACTGTGACTTTGATTGAACTGAAAGATTGAAATACCGAGCCTGCGTTCGATAGTTTATGGcttaataaaacaacagcatGATTTCCTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12089 lncRNA downstream 32884 31580738 ~ 31589790 (-) True G8101
TU12088 lncRNA downstream 42518 31579930 ~ 31580156 (-) True G8100
TU12081 lncRNA downstream 73920 31548195 ~ 31548754 (-) True G8093
TU12055 lncRNA downstream 126764 31492297 ~ 31495910 (-) True G8074
TU12069 lncRNA downstream 142330 31479187 ~ 31480344 (-) True G8084
TU12105 lncRNA upstream 108 31625931 ~ 31626415 (-) False LOC122349741
TU12106 lncRNA upstream 108 31625931 ~ 31626415 (-) False LOC122349741
TU12122 lncRNA upstream 1147 31626970 ~ 31627999 (-) False LOC122349752
TU12127 lncRNA upstream 1147 31626970 ~ 31627999 (-) False LOC122349752
XM_043237501.1 mRNA downstream 20233 31595831 ~ 31602441 (-) True glb1
XM_043236147.1 mRNA downstream 27379 31591137 ~ 31595295 (-) True cldnd1b
XM_043236111.1 mRNA downstream 50053 31561981 ~ 31572621 (-) True tacr3l
XM_043245858.1 mRNA downstream 229588 31384340 ~ 31393086 (-) True LOC122349710
XM_043245847.1 mRNA downstream 244135 31372496 ~ 31378539 (-) True LOC122349700
XM_043245898.1 mRNA upstream 1080 31626903 ~ 31630020 (-) True LOC122349752
XM_043223784.1 mRNA upstream 8578 31634401 ~ 31661603 (-) True LOC122327810
XM_043233764.1 mRNA upstream 102265 31728088 ~ 31734933 (-) True best2
XM_043233726.1 mRNA upstream 113962 31739785 ~ 31745699 (-) True get3
XM_043233753.1 mRNA upstream 120139 31745962 ~ 31750050 (-) True rnf11a
TU12077 other downstream 68639 31550186 ~ 31554035 (-) True G8089
TU12079 other downstream 85258 31532069 ~ 31537416 (-) True G8091
TU11966 other downstream 665188 30946089 ~ 30957486 (-) False G8009
unassigned_transcript_184 other downstream 759713 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11729 other downstream 992169 30630234 ~ 30630505 (-) True G7868
TU12124 other upstream 1147 31626970 ~ 31629972 (-) False LOC122349752

Expression Profile