RNA id: TU1634


Basic Information

Item Value
RNA id TU1634
length 5568
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1124
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5561377 ~ 5566978 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcatattaaattgaaaatatactTTGTAACAGGATCATGTAACAAATATGAACTATTTGTGTTCAGTTGGCATTCAGTTTGGTGGAGGGTGGTCACTACCAATTAAAATGGAAACAGAAAGGGGAATGATTTAAAACACTGACAATAATTAGTTTTGTCTCGGGTTTTTTCCtgttataatagaaaataaaagaaagcaatcTACTCAACCGATAAAGCCCTAAAACACAGCGGCGATCATTTAGCCACATTTACGGCTTAATATCACTgtgttaaataacaaaatatcaaaccaaatggctttcaaacaatatatttaataaaataagtctCTTAGGTTTTAAATTATGAAGCAACACGCTGCTCAAAGCATTAAAAAGCGTTTTGACACTTTccagttgaaaaataaaatcaccagTCAATGcaaaaattcagattttgagAAAGATTGCAGAAACCACTTGGTTTAATATGTCGTTATAAAAATGCACCGGAAATAAGTgtgatttaaagagacagttcacccaaaaatgaaaagtctgtctAGTTATTCACCCTCGTGTTGGCACGACATGatggtaattaatgacagattcTTCCTTTTTGTTAGAACCATCCTTTTAAGAGTACTTTTTAGGCTGCTATTTCTAATTAGCTTTGCACATACCGCCATCAGTAATAATGCACTGGCCACCCAGTGATTTTAAACAAACGATACCACAAGTGCTTCAGCGGAGCAGTTCTCTCATAACTCACCATGTACACGCGATCATATCTAATAAAAAGCAATCAAACCAAATGCAGacgaacaaaacaaatatacaataaataaagagagCTCACTCTAGATAGAtcagtattttgttttaaaattaggTTGACAGGAGTAGATAATGTTGTGTCTTAAACAGTCATATTTACAATTAACAAAGGTAAAGAAATAGAGAAAATGGGCACTTATGGAGAGAAGGAAAGGGCCACAGCTAACCATAAAAGCAGCAAGAGAAGAAATCCACAGAACAGAGCAtgacacacaaagaaaacaggCCCGAGGAAAACAGAACATCACTTGAGATCAAATCAAACGTCACGAATATACAAAGTTACTGACACAATGTCAGACCATTACTACAGACGGCGCATGTTAAACAGAACTGAACGCTTCATGGCaaagaaatgactaaaaaaaatgtcttgatgcAACAGTCTCTATATATTTACACTCCCCATAAATCTTTCAACActctacaaaaatacttttcacTTCTCTTTAGAGGAGCACACTTGTTACAGAGCAGTCGCTCCGATGCCTGTACTTTCACGGCTCAGAAATACAGTGCATTCCACTGCACGCAAAATGTTGTATGTTTGTAAGGGTGTACGAAATTCTGCGCTTCACCCTACGCGGTGTGTCATATACGTACATGTACAGTTTGGTAGATGTTGAATACTGAGTTACTGTAAATTGTGTGAATCTTGTAGTCTGATTCCCGGCAGTCCATAAAAATGCTCCATTTGTGTAAAAAGATGCTTCCCTGCAGTGGTTCCACGTGCGTCAGTTTACATGTCAAGTTAATGATTCAAGTAAAATCATGAAATatgattcaattaatttaaacatggttcatttaaagaattttaaCCCGTTCAACGTGAtctcatttgtattcatatagGCATTGTTTAGTATGTAATGTGTGTTTCATATATCAATGTATTGAGAAAATATAAACTGCAAACCCTTTTACACTATCTTTCAAAAGTTCGGgaccatctttctttctttctttctttttttctttccaaaatatctaaaaataataataaaaaaactttattcagcaatgacattaaattgatgaaaagtgttacatttaaatagttacagaatatttctgtttcaaataaatattgttcttttgtATTTAACATTCATTAAAGATCCATGTTTCCAAATAATATggtaccaaatcagcatatcaaaataattgtaattttaataaattgttatatatatgaCTTCTAATTGTATTTCaccatatttattattatttctaaaaaaaaatgtttcactgtattgtttttatcaaataaacacagcctggTGTGcataaagcacaaaaacaatgaccccaaacctttaaatgtAGTGTGCATACAAATTCTATAGAATGtacatattcataaaatatcacaaaagctatacatttaaaagggtttacattttataatgctcATTACATGAATCTAAATGTACAAACATGTACACATGCCTAGAGATCAGACAAGCCAGTAATCCATACTAAAATCAAAGATTTAACATTAGGCTTTGTGATACTTGGCAGTTAAAGACAATGGAAATGTTCACGCTTCTTGTCGCAACACAATATcccttatttaaataattgtaacagTAATGACTTTGTGTTTATATGCCAAAAATTGGACAAAACGTCACCAACGTGGGATTATTCTGATCTACAAACTAGTCTTCTGACAATACATCAGTAAAAGCCACACAGAAACATGAAAATACAAATGACAGTAGTTTGGAAACTACAGGGGCAACACTTACTGTATGTGTGCTACACTTGCTATTAGATGTGACAACATAgacagacaacaacaaaaatgattttagacCACTGACAGTGATACAGACTGACATCTGTTTCCTGAACTATGTTAGTGCTGGAGAATGGCacattaaagtttttttgtgtttgcaatTTTGCAAAATACAGCTCAATCACGTGAAACTTTGATGCTTAACATCACATGTCCAACCTCATTAATTCAAGTAAACCTTAACTAGATAATTTATGAAATACAATGAAATGccccaaataaaaatgtatagcaGCCATTGTGAATAAatagtaatgaaaataaaataaatgttgtgcCCAATTTCCGTTTTCCAATTACAGATCTGAAAGGTTCAGTACTCGCACTCTCAATTGCACTCATTACTAGTGATTATGTTAACCAGCagattaaaactaaatgcatttatttgacttcAGCTGCAATCAGAACGCAGCCTAGAcgcaaacacacagaaaattTATGATTGAAAATCAGCATGAAGCTTTTAGAACCCAATTTACTTTTAACTGAGCTAAGCAGAATATCCACAATTGATATTATCAAACGTAAAATTATTAGATCGTAAAACTTCTACTTAGACCTTCTTCTGACAAAGCTTTTTGACAGGGACGTGGAGGCTGAAAGTCAAGTTCAGCAAAGAAATACGTACTTGTTCAAATTGATCATTATTCGGTTTATTGCCGTAACTACGTTACTATTAGCTTGCTTTAAATCACTGCACTgacaattaacaaaaagaaTTCAGAAAGCCTCTAATATCTGCAACAGTAGCTTCAACAACGCCAGACTAGCTAGTTGTCTACCGGTTAAATAATACTGACGAATTACACATTATTATGGAGGATTATAAAACGTGGGTGTtagaaaaataaagtggaaTACCAGAAACATGTCGACTATAACTTCAGCTTTTGATGGCATATTGACTGACTCAGGTTAGATTAACCGAAGAACTGAAAAGTCGCAGTTTTCCATTCTGACAAAAGAGAATTAAAGTTCCCAGACACCCTTTGCCAGGGCTTACTCAGTTTAGGTACAgataaagtaaattaatgtaaacacCCTGTAAACCATTCAGTGCCATTCTTCCTGATAATTAATTCTTCATATCTCTCAACAGGTGAGTTCACCGCTCACCAAATGGTAATAACCCCACTGAcgattattgtattgtattccCTATACGAACAAATGCCTCTCAGTGCCTTATCAGCCTCCTATTCAACTCATTGTGCTGAGGAACTCGACTGTCCATAATTTCCCAGTCCTCTCAGGTCTAACAGTAGTCGTCCCGGTAGGGCAGCAGCTTTAGCGGTATGAAGGATGGGCTGAAAAAGTGCAAGTGTTCCggtcacagaaatataaaattcGAGTGCATATTTACGCCTAGAATCTTTTACACTTCTCTGTCCATTCGCAATCAAATGTTTCGTTTGAAACATCCATGTTCTGTTTTAGAGTGAACCACAGGTAAAACCACCTActgtacactcttaaaaataaacagtaaaattatCCCTTCATTGGCATCTATGGTTCcatgaattacatttaacattcatGGAATCTTTCTATCGCACAAAAGGTTTTATAGTGGAAAAAAGTTCTCCACACAAAGGGAAAATTTTACTTGAAAGGTTCCATAGTGGGGGCATTCAAAActgttcctggagggccactgttCTTCAGGattttagctccaaccctaattaaacacacctgaaccaaatTAATCAAGGTTTTCAGATTCACTAGGAAATACCAGGTAAGCGTGTTGGAGCTACTTGAAGCTAAATGTAGCAAGATATTGGCCCTCAAGAAGCAGAACTGGACACCAAAGTTAAATGGAATTGCTgtgaaatttttgtttttaatatctaattTCACCAAATGAATGATGTTAATAAATCGGATTATGTGCCATCCCATATGAGAGACTTTAAAATACCTgtagaggaggaaaaaaaaaggtcctgGACATGATGAGGTCTTTGTGGATGGATGGGTTGCGTTGACCTTTCCCCAGTGGTTttatatgtcatattttatgttacataaTGTCAGTTCAGTGGCTTACATTGTTTCTCGTCCCATTTTTGACCACCAGAGGATCAAGGAAAGACATTTAAGGTGCTGGTAGAAGAACCAGGCTCTACAGAGCATGGAGACCTGGACGTTAGACCACAGTGTTTCTCTGCCGGTACGGAGGAGGAGGCAGGACTGTTCCTGGCTTCATACCAGACAGATATTCGGGGTTTTCAGCCACGGCAGGCTGTATGCGGCCATTCTGCTTGTAAAGGAACTTGTTATTGCAGATCACCGAAGAGTCTTGGGAGTTTTGAGGGATAACCTTGGGCGGGAGGCTTTGCTGCCAATACTCAGGATTGTCAAAGCTATTCTTGTACATCTTGTCCACTAATGTGGTGCCTGGTTGCACCGAATGACCCGGTAAGCCCATCGTGCCACCTTTGCCAGACTTCGCCAAGTGAAACTGTTGTGGCGAACGATTAGATTTGCTTGGGTGCCCTGGTTGGACTTGATGGCTCACTAGACAGATCTGACCTGCTGTTGCTGGCAGGACAGATTTGCTGCCGTGATCAAGAACTGACTGATCATTTTGGCTCATGGGTCCGGGGTGTACAGGCTGAACTGGGGGTATGGCGAAATGAACGTGCGGTCCGTGGCTGTGATGATGGAGTTTTCCCATTTGTGTCATGTGGGGGACATGGGTGGCTTGAGTGTGGGCTGCTGTGGTCACCTGCAATGGGACGGAGACTCCATTTTTTCTTAACATCTCCTGGTTCATGCCGCTGGTGTTATTGAATGTGTTGAGGTAAAGGGGCTCGTTGATATACTCGTCTTCACACTTGGGCTTCCCATCAGGAGTGCTGTGGTAACCCAGGTTGTCTAGTGCGTGAATGTCTTTAGTTTTACGCCTCGTTACAAAAGGATTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1620 lncRNA downstream 522 5560618 ~ 5560855 (-) True G1116
TU1619 lncRNA downstream 4035 5556880 ~ 5557342 (-) True G1115
TU1618 lncRNA downstream 5627 5555490 ~ 5555750 (-) True G1114
TU1499 lncRNA downstream 409535 5150493 ~ 5151842 (-) True G1028
TU1503 lncRNA downstream 415251 5145441 ~ 5146126 (-) True LOC122346132
TU1622 lncRNA upstream 12548 5579526 ~ 5607918 (-) False G1117
TU1623 lncRNA upstream 36336 5603314 ~ 5607918 (-) True G1117
TU1624 lncRNA upstream 39625 5606603 ~ 5607918 (-) False G1117
TU1658 lncRNA upstream 210120 5777098 ~ 5778154 (-) True G1146
TU1667 lncRNA upstream 222689 5789667 ~ 5789919 (-) True G1151
XM_043240720.1 mRNA downstream 485766 5038724 ~ 5075611 (-) True klf7a
XM_043240805.1 mRNA downstream 601167 4956119 ~ 4960210 (-) True mdh1b
XM_043240448.1 mRNA downstream 664477 4765299 ~ 4896900 (-) False pard3ba
XM_043240440.1 mRNA downstream 664477 4765299 ~ 4896900 (-) True pard3ba
XM_043240468.1 mRNA downstream 821917 4677795 ~ 4739460 (-) True nrp2a
XM_043241868.1 mRNA upstream 44930 5611908 ~ 5616115 (-) True mxa
XM_043236157.1 mRNA upstream 58732 5625710 ~ 5629067 (-) True LOC122342384
XM_043242075.1 mRNA upstream 79168 5646146 ~ 5655085 (-) True efnb2b
XM_043242159.1 mRNA upstream 89659 5656637 ~ 5661762 (-) True arglu1b
XM_043241616.1 mRNA upstream 179492 5746470 ~ 5766103 (-) False radil
TU1193 other downstream 1262184 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 1547090 4007840 ~ 4014287 (-) True G782
TU999 other downstream 2871913 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 3956393 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 4431740 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 210593 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 279098 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 544485 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 700685 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 891073 6458051 ~ 6468254 (-) False gaa2

Expression Profile