RNA id: TU1797


Basic Information

Item Value
RNA id TU1797
length 3673
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G1240
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5970390 ~ 5974062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTAATAAGCAGACCTTCATGTTTCCATAAAcctaaatgcaattaaatgccCTTGAAAAGAAATCTGAAGCTATAAAATGTTTACAGGTATGTAGCTCTAACTAGATTTATAATACAGTGTGTCCCTTATGGTAGTGTGCTTTATTATGCcataagaaaaaacaacagaaataaggGCAAGATACAGTTGGGTTGATATACATGCTATTATTACCAGGTCAACACCCAGAAGCTTTCCGGGGCTGTCCTTGTTtatcatttcaaatacattGGGATATATTACAAGGTAcagtaatgtttgtttttcaaaaaccaATATGAATAAGCTGGATGATAAAAACCTCGCGAGTGAAGTTTGGAGGATGGACGTCTCCACAAATAGGGTACAAACTAGTGTCCTGTTacgcttttgtaaaataaatacatataaaaatatcatgATCTTCAGACAAAGAGCTATTGATGTTTAATAAACTATTTGCTAACATAAAATTCACAGCATGCCAATAGCTAGTTTCAAATTCAACCCTGTTATTAAGgttacattaagaaaaaaaagcagtatttttgttactttatgGGACATATACATTAATCAATAACTACAAACCAACATTTAAGTCTAAACTAAAGCTCCCATAATGAAAGATTTAGGCAAAATGCCTCCTTTTACTGacatagttttatttttattatttttaaatattccatttattattttaagcccTATTTTGTACCCTATTATTGGAAAGTATTGACATTTTGCCCTGTTTATACGCTGATCCGCCTCTCAAAGTTTTACACATAATGGCAATGGATTACAGGAAACATTGGGAgcaaaatagaaatcttttcaAGTAGTTAACAGTCTCTAACCGTTTAATGTCCATAGTTTTTCAACAAAATGTATCTTGATGCTAAGTGGATGCTCTCATCTGTAGATGCACCCAAAAGCATCATGAATCAGTCAAACAGCATTCTGGATCTCACACTGCATACAGGACACATATCCTGACCTCAATACAGCGATACTCATTAATATTTAGCAGCCCTTGGTTTTCCCAGATACCACCATTACACTCTAGTTaatcacaaaatacatttttttaaagaaatgccaGGCATAATAATATGGCCAGTACATAATGATATGTATTAGCATGATTTTGAGAATGCGTAAACTGCAATcagtaaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcagacaatcaatcaatcaatctttagagggcttttcacacttttcccacaaatcattttaatgtatcGTTCTAATAACTGCTTATTTATCTGTAGAAATGTGCTttactgtttaaaggtttgtggtaggtaaaacataaataaatagataaataaataaaaaattgtaataataattatttagtttCATAAGTCTGTTATGCTCACCAAgtccacatttatttaattaaaaatattattatgcaatattataatataaaatactgaataaaataatgaaatcactttctatttgaatttatttaaaaaattagcttattcattttatgaaaaaactgAATCCTCAGCATCCTCACTGCAGTCTTCCGTgccatatgatccttcagaaatgatttaaatatgctgattcgctcaaaaaacatttattgtttcaaaGAGTTGTTAACCCAGGTTTAAGTGTGAAAAGCCCTTACGTGACTGGTAATGCAAGGGAATGTTTTCTGTGAGGAAATCACATCTGCACTAAACAAGCGTTATGTTGTTGTGAATACCGCAACActgaaaagaaaggaaataagCTTATTCTCCAACTGCCCGATAGCaaaagcacttttagcatagcttagcattgATTACTGAATCCAGTTAAACCAGTAGCAGTGTATCATGTAAGCTGGGGACTATTTACTACAGGCGCTGAgtgatatcactgcgcctgctgcGGCCATCTTACAGCAGCAGGATTATTACGCCAGTATGGGAGTGTATCATATCGGTCTATAAAATCACAACCTTTCATTTTCTGccagtcttagtacacaatataattacaaaagagccaagttttaaataggaaaaacacCGAAACTTTTGACAAGATGCTACTGGATACAATgacctatgctaagctatgctataAGTGACTCGAAAAAGACTcaaagatcggctgaatagattccaaaatggtaaaactgaaCTTAttagcctatttccaaaaacagTGGAGTGTTCTTTTAACGTTCATGGGCTAATTATTACTGAATTCATCCCACGATGGTCCAAAACACCAATGTTGTCAAACCAAAATAGGTGTTAGCATTCATGCTAGCTCGTTTCTTTGGAAATCTTTATGTTtgtgcatggaaaaaaaaaggtcctgATTGAAAGTTTACATGAAGCATGTCAGTGAAATACAGTTCAAAAGAAGGAACACTTCAAATTTATGTAAAGACGTGTTTACAGTAATGCCTTACAATGAACGTCAGGGGGGAAAATATTTCAGAAGGTGTAAAGGAAAAGTTCTTTCTGTAAAAGATGAATTTCTGCTCACTACCCGTGtgttattaatcattaaattaaacaacattacaaGTTAAATTAAGCtcttttaaatatgtgtatatatatatcattggCTACACTTAATTATGGTTAAACTTTATATTGACAGTCCACATATtctactaaatataaataactttctAGCTACATGTCAACTATTTCTCAGAGTATACtattagggtttagggttattaaaataagttgacatatacttgtgAAGTTTCTAAAAGTCAGTATgttgttagggttagggttgtgaacccatcaaaataaaatgttagaagttattaagcagacTACCGATACTCTAacgactgctagttgacatgtagttgcttACCGTTTATAGTGGACTGTCAAATAGTTAcctaatttttcatttattgatttcgCTCCAGGTCCTCCACagactgtaaaattacattttacaagaaatattattatatttcagtatatttcagTTCTGCTTGAAAATGTAACGCTCACTTCAATGCATTACTTGCCATGTGAAACAGCTTCAGTGTAGAAATTGGATATAACTTTGCATAGACAGGGTTATTAGGAAATGCTATTACACCAATGTCATGTCGACGCAATGCTAAAGTCTAAAAACAGTGTCTATTTTATCCTGCTGCAATGCTTTTCCCCATAGACGTCCACTGCATCACTGTACACACAAACGGAGgaacaaatcaaaatgattttctgtAATAATCTGCAGCACAGATGTGGAGCTTGAACCCGGAACATTCCTTTAACACGTTTCTTCCTGAAGGCCAACAGCATGTAAAACTCTGACCctttacaaaaatatcacaTGCCACGCATATATGCAGTAATCATCTCATTCATTCAGCTACACAATCTGCATTATGAAACATGCATGTTTCAGCTAAAATATCTCGGTGTCGTTTACTCTGTAAGACAATAGGGTGTTACAATTAGGTCATgactttaatgttaaataatcaCGTGACGTAAGGGTTTGCTTGAAGATGACCAATATAGTGCTACCATTTAACCCCCATGTTTTGTTGAGATTGACTTACTAATAATTAGTCATTTCCCttctagttattttattatgttccTCAGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1667 lncRNA downstream 180471 5789667 ~ 5789919 (-) True G1151
TU1658 lncRNA downstream 192236 5777098 ~ 5778154 (-) True G1146
TU1622 lncRNA downstream 362472 5579526 ~ 5607918 (-) False G1117
TU1623 lncRNA downstream 362472 5603314 ~ 5607918 (-) True G1117
TU1624 lncRNA downstream 362472 5606603 ~ 5607918 (-) False G1117
TU1806 lncRNA upstream 46494 6020556 ~ 6020931 (-) True G1246
TU1809 lncRNA upstream 57834 6031896 ~ 6033999 (-) True G1248
TU1822 lncRNA upstream 88294 6062356 ~ 6063185 (-) True G1254
TU1825 lncRNA upstream 92249 6066311 ~ 6067614 (-) True G1257
TU1836 lncRNA upstream 114961 6089023 ~ 6089403 (-) True G1263
XM_043242280.1 mRNA downstream 99633 5861026 ~ 5870757 (-) False grapb
XM_043242263.1 mRNA downstream 99633 5861027 ~ 5870757 (-) False grapb
XM_043242272.1 mRNA downstream 99633 5861027 ~ 5870757 (-) False grapb
XM_043242245.1 mRNA downstream 99633 5861028 ~ 5870757 (-) False grapb
XM_043242253.1 mRNA downstream 99633 5861028 ~ 5870757 (-) True grapb
XM_043242231.1 mRNA upstream 407 5974469 ~ 5979703 (-) True syngr3b
XM_043241797.1 mRNA upstream 65493 6039555 ~ 6047809 (-) True zgc:112980
XM_043241820.1 mRNA upstream 80830 6054892 ~ 6059265 (-) True ptcd1
XM_043242194.1 mRNA upstream 97868 6071930 ~ 6073942 (-) True LOC122347124
XM_043242185.1 mRNA upstream 97868 6071930 ~ 6073941 (-) False LOC122347124
XR_006251180.1 other downstream 117146 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 192733 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 1671197 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 1956103 4007840 ~ 4014287 (-) True G782
TU999 other downstream 3280926 2688765 ~ 2689464 (-) True G654
TU1845 other upstream 137401 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 293601 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 483989 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 565466 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 1097527 7071589 ~ 7127407 (-) False trpc5a

Expression Profile