RNA id: TU1877


Basic Information

Item Value
RNA id TU1877
length 250
lncRNA type read_through
GC content 0.52
exon number 2
gene id G1292
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6227292 ~ 6277288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttTACAGTCTTTTCAGagtctttattttttgtattgtactGAAGGAACGAGGAGCTTGTGCATGTATCTAGCAGACAGTGCCGCAGAGCTGCAAATCACAAGCAGCCACAAACAAAACTATGAACACCGATTTAAACATGTAtctaaatacaaaaagaataaagaatgaTGAAGAACAGCCGAAACATAAACAGTTCCAGACAAAAGCTCCGTGGTTTTCGTCATCCGATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1866 lncRNA upstream 28234 6219924 ~ 6221396 (+) True G1287
TU1752 lncRNA upstream 134349 6114964 ~ 6115281 (+) True G1206
TU1747 lncRNA upstream 158473 6090845 ~ 6091157 (+) True G1201
TU1746 lncRNA upstream 159177 6090173 ~ 6090453 (+) True G1200
TU1745 lncRNA upstream 159775 6089509 ~ 6089855 (+) True G1199
TU1900 lncRNA downstream 1929 6279217 ~ 6280631 (+) True G1301
TU1950 lncRNA downstream 54788 6332076 ~ 6345567 (+) True G1332
TU1949 lncRNA downstream 62258 6339546 ~ 6343720 (+) False G1332
TU1948 lncRNA downstream 66637 6343925 ~ 6345567 (+) False G1332
TU1971 lncRNA downstream 123104 6400392 ~ 6400757 (+) True G1348
XM_043241721.1 mRNA upstream 18448 6226398 ~ 6231182 (+) True tlr2
XM_043242171.1 mRNA upstream 136105 6107861 ~ 6113525 (+) True zgc:77849
XM_043241988.1 mRNA upstream 149800 6094349 ~ 6099830 (+) True fscn1b
XM_043241952.1 mRNA upstream 178994 6062142 ~ 6070636 (+) True slc29a4b
XM_043241960.1 mRNA upstream 178994 6062142 ~ 6070636 (+) False slc29a4b
XM_043242291.1 mRNA downstream 11442 6288730 ~ 6292181 (+) True rasd3
XM_043241895.1 mRNA downstream 17461 6294749 ~ 6299522 (+) True plk1
XM_043241683.1 mRNA downstream 36682 6313970 ~ 6327004 (+) True chtf18
XM_043241690.1 mRNA downstream 36682 6313970 ~ 6327004 (+) False chtf18
XM_043242026.1 mRNA downstream 80540 6357828 ~ 6362500 (+) True uncx4.1
TU1714 other upstream 161975 6057404 ~ 6087655 (+) True G1183
TU1696 other upstream 368496 5879460 ~ 5881134 (+) True G1168
XR_006251062.1 other upstream 1272784 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 1304789 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 1891334 4358007 ~ 4358296 (+) True G826
TU1931 other downstream 8570 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 256214 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 434347 6711635 ~ 6845548 (+) True G1447
TU2148 other downstream 502330 6779618 ~ 6782141 (+) False rgs11
XR_006251795.1 other downstream 569212 6846500 ~ 6858568 (+) False LOC122351737

Expression Profile