RNA id: TU1900


Basic Information

Item Value
RNA id TU1900
length 426
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1301
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6279217 ~ 6280631 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCATATAGGTCAAAGCCGTTTACTATGCATGTACCAGGGAAgaacacatactgtaaaataaagggTCTTTCTATAGGCTTTGGTACTTACCTTTTCAGGGTCGACCTTGTCGTAGAGCTTCAGGACGTAGAGGACACGGTCCTGGACACTCTCTAGGGTTAATGGGGGCAAGCCACCATACTTCCTCCACTGATAAACCTGAAGTGAACTGCCGGAGAGCTGCCGGCAGAGACTTGTGTCCAGTAGTCAGCCCTGAAAATGTTCGTCCTTGGGTGAGTGGAGCTGCTGTTAATGTCGAGGCAGCAGTGACACGGTTAAAACATACAGAACGGTGGTTTAGTGCTCGGACACACCGGACAACGATGCGCGCCGCCATGTTTCTCAATCCGCTCCCACAATGCACGACGCTACCACTGCGCATGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1874 lncRNA upstream 1929 6227292 ~ 6277288 (+) True G1292
TU1878 lncRNA upstream 1929 6227292 ~ 6277288 (+) False G1292
TU1877 lncRNA upstream 1929 6249630 ~ 6277288 (+) False G1292
TU1866 lncRNA upstream 57821 6219924 ~ 6221396 (+) True G1287
TU1752 lncRNA upstream 163936 6114964 ~ 6115281 (+) True G1206
TU1950 lncRNA downstream 51445 6332076 ~ 6345567 (+) True G1332
TU1949 lncRNA downstream 58915 6339546 ~ 6343720 (+) False G1332
TU1948 lncRNA downstream 63294 6343925 ~ 6345567 (+) False G1332
TU1971 lncRNA downstream 119761 6400392 ~ 6400757 (+) True G1348
TU1981 lncRNA downstream 156323 6436954 ~ 6437177 (+) True G1357
XM_043242036.1 mRNA upstream 11716 6262422 ~ 6267501 (+) True cacng3a
XM_043241842.1 mRNA upstream 18469 6233036 ~ 6260748 (+) True prkcba
XM_043241833.1 mRNA upstream 25520 6233080 ~ 6253697 (+) False prkcba
XM_043241721.1 mRNA upstream 48035 6226398 ~ 6231182 (+) True tlr2
XM_043242171.1 mRNA upstream 165692 6107861 ~ 6113525 (+) True zgc:77849
XM_043242291.1 mRNA downstream 8099 6288730 ~ 6292181 (+) True rasd3
XM_043241895.1 mRNA downstream 14118 6294749 ~ 6299522 (+) True plk1
XM_043241683.1 mRNA downstream 33339 6313970 ~ 6327004 (+) True chtf18
XM_043241690.1 mRNA downstream 33339 6313970 ~ 6327004 (+) False chtf18
XM_043242026.1 mRNA downstream 77197 6357828 ~ 6362500 (+) True uncx4.1
TU1714 other upstream 191562 6057404 ~ 6087655 (+) True G1183
TU1696 other upstream 398083 5879460 ~ 5881134 (+) True G1168
XR_006251062.1 other upstream 1302371 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 1334376 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 1920921 4358007 ~ 4358296 (+) True G826
TU1931 other downstream 5227 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 252871 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 431004 6711635 ~ 6845548 (+) True G1447
TU2148 other downstream 498987 6779618 ~ 6782141 (+) False rgs11
XR_006251795.1 other downstream 565869 6846500 ~ 6858568 (+) False LOC122351737

Expression Profile