RNA id: TU1949


Basic Information

Item Value
RNA id TU1949
length 2165
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G1332
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6332076 ~ 6345567 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATAAGTTTAATTCTTACTGAATCAACTGTCTATGGTAGCCCTTAAGATACCAGCACAAACATACAGTCTGAATATGGTCTAATTATTGTTATcgataacataaaaaaaatatattgagaaATATGTCAATATTGCACACCCCTAAAATCTCACCTCAGGTCATTTTTTCCAACTTTGCATAGATACAAAGTGAGGCTTGACAAGGCAGTattcaatttaaacatttggatgtataaaaatggcaaaaaggcTACAAAACTAAAGAAAATCTGACCCGCAACAACACAATGTCAACAATAGAATATTTTAGGAAACTTTATTTCCACATTACaccttcaaatattttttcaaagtcATTTTTCAGTAAGTTCAAAAACAAAAGCGAGTGCATGTTCTCTACATATATTGCAGCATTACTCAATAACTCGGCCACCGTACTTAAACAGCCCTGAGATCATTACACTGGCATCATTTTCATTACCCagtccaacaacaacaacaacatcaagaaaacaagaaaaagtgcAGTCTCTGGCTTTGACTAGTACAACAGATTCTGAGCTCCTTTATATTTTCAATGCAAACatgtatttgaaaataacaCTGTAGCGTGGAAACCCACACCACCTGGAATTAACcgttcatttaatttcataaataagtTAGGATTGTGGATCTTAACTGGTAGATCccctctgagagagatggaaattAAGGAGGTGTAGAATACAGAAATATCTGCCTTAGAAGTTGAAAGTAAGTGCGTTACAAGTGCATATCACTGCACTGAGGTCACACGGCTGGTCAAATCATTCTAAATATAATCAAtactgtgaaaaacaaaaagatttataGATATAGTCCTTATGTCCATTTTcaataagtgcatttttttttttatccaaataaactttttttgaaaaagattgattctaaaacatacaaattaaatGTCTCCTAATCTTctcttttaaatttgaattcagATCCACGTTCTGTCAGCTCCATCTTCATAATCATACGAAAAGTAGCAGATTTTGCTTTAGGTAACAgccatctttcatttcattctaatGGCCATTAATGTAGCTTTCTCCGAGCATTTAGACCATCTGTGTGCATCTGGCTTCCATCTGTGGGCTTTCCCAAAGGCGTGTAGATTTACCTAAACCAAAGAGCCATGGTGTTAAAGAATGAagaggagcaggagaagaaacaGGGACAGAGAGAAGATGAAGCGTGCTAGAGCACAGCATGGAGTTACCTGAAACaggaaagagaggaggaggaagaagaagaaaacaccAGGATGacaaatgtaacattacagCGATGGTgcaaagtgcttttaaacgtcaCACAAGAGTTGTGCTTCAGCTCGTCCATATCCATTGCACACAAAGACAAGAGTACAAGATCATGACagattatgaatttattaagCCCCTGTATGTAGCTAAAGGTGAAgcgtgtcatttaaaaaaaatgctagaaTAGTTCTGGAATCAATTCTATTTTGTGCTGTAACTGGAGCATAAATAACACACTCCACCTTTAAACAAACGGAGATGATGCTTACCAAGTTCCATGGTTATTTTCAGGATCAATATCTGCTCACCGTGTGCGAGACCATGCTGGAAATTTCCAGTTGCTGGGCCAGGAAAAACAGCTCCTTTGCAGGCCTGAGGCTGTCCAGGGAGTTTGGTGCCAGGGCTGAGCCCAGGGAACGGGAGAGCATGCAGGGGGGCAAAGCTCGGTAAAACCCCCGGCTGTACCGTGCTGGGATAAGAGGATGGAAGGAGTGATAGAGAAGGAGTGGGAAGAGCTGGGTTTCCACAGGAGATCTCACCGGCTGCCTGAAACACAAGTCAAGAAAATTGTGTTATTCATAAGTGTTATTCAGTGCAAAAAACCTCAGTACTTCAGACAAATCCTTTCCTATTTAAGCTCCAAAGGAATTGACCAAAAACCTTGTATTACATAATATGTACTGAACTGATCATAACTGatagtaaacatttaaaatttgttacataacatttaatcaattttgttgttttgaaatttcttttcagtaaacatgttttaaaaaaaggacaaaaatattaactgttATTAACATTGACAAGTAATTCTCCATGAGcaaccaaatcagcatattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1900 lncRNA upstream 58915 6279217 ~ 6280631 (+) True G1301
TU1874 lncRNA upstream 62258 6227292 ~ 6277288 (+) True G1292
TU1878 lncRNA upstream 62258 6227292 ~ 6277288 (+) False G1292
TU1877 lncRNA upstream 62258 6249630 ~ 6277288 (+) False G1292
TU1866 lncRNA upstream 118150 6219924 ~ 6221396 (+) True G1287
TU1948 lncRNA downstream 205 6343925 ~ 6345567 (+) False G1332
TU1971 lncRNA downstream 56672 6400392 ~ 6400757 (+) True G1348
TU1981 lncRNA downstream 93234 6436954 ~ 6437177 (+) True G1357
TU1982 lncRNA downstream 94088 6437808 ~ 6443476 (+) True G1358
TU1984 lncRNA downstream 98837 6442557 ~ 6442860 (+) True G1360
XM_043241683.1 mRNA upstream 12542 6313970 ~ 6327004 (+) True chtf18
XM_043241690.1 mRNA upstream 12542 6313970 ~ 6327004 (+) False chtf18
XM_043241895.1 mRNA upstream 40024 6294749 ~ 6299522 (+) True plk1
XM_043242291.1 mRNA upstream 47365 6288730 ~ 6292181 (+) True rasd3
XM_043242036.1 mRNA upstream 72045 6262422 ~ 6267501 (+) True cacng3a
XM_043242026.1 mRNA downstream 14108 6357828 ~ 6362500 (+) True uncx4.1
XM_043241760.1 mRNA downstream 136416 6480136 ~ 6619283 (+) True elfn1b
XM_043245219.1 mRNA downstream 331677 6675397 ~ 6693693 (+) True LOC122348963
XM_043241235.1 mRNA downstream 418259 6761979 ~ 6765915 (+) True pmm2
XM_043251225.1 mRNA downstream 427766 6771486 ~ 6782135 (+) True rgs11
TU1931 other upstream 52348 6285858 ~ 6287198 (+) True G1318
TU1714 other upstream 251891 6057404 ~ 6087655 (+) True G1183
TU1696 other upstream 458412 5879460 ~ 5881134 (+) True G1168
XR_006251062.1 other upstream 1362700 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 1394705 4938183 ~ 4944841 (+) True prkag3a
TU2062 other downstream 189782 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 367915 6711635 ~ 6845548 (+) True G1447
TU2148 other downstream 435898 6779618 ~ 6782141 (+) False rgs11
XR_006251795.1 other downstream 502780 6846500 ~ 6858568 (+) False LOC122351737
TU2312 other downstream 803417 7147137 ~ 7152220 (+) True mpc2a

Expression Profile