RNA id: TU1982


Basic Information

Item Value
RNA id TU1982
length 537
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G1358
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6437808 ~ 6443476 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTATATTCATCACTCGATTTGAGCAGCAGCAAACAAACACTCTTAGCATAAATGCATATCAAAAGCAGCGACTCATGTAAAGCTCAATGGGGTGTCCTCGGCTGTAGACACTTTCAGTGGATCAGATGGAAGGAAACACAGCAGATTTTTCACTCAACGACAAAGCCAAACAGAGACAGAACCGGAATAAATTTGTATGCATTAGAAGCCCACAAACACATGCTGCAAGACACAAATGCTAACACAGGCTACGTTATTAAGCTGGATCTTGGTCAGTCTCTGAGGGACTAACAGGAGATACGACGCTGCCACTGCTGGAGTCTGGAAGAGACGAAAACATACAGATGAACAAAGAAATCGTGAAACTAAGAAACAAATGTACCGCATGTAGTGCTCTTATTAATCGTAACACGAATGAATGTTAATGCTATTGTTCAGGTTAACTTAATGCATGTTTGGCTGTACTTGGGATTCTTTGAGAAAGTAACTGTATTTCTATAGTTTATGGACAcggtacaaaaaaaattatgccatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1981 lncRNA upstream 631 6436954 ~ 6437177 (+) True G1357
TU1971 lncRNA upstream 37051 6400392 ~ 6400757 (+) True G1348
TU1950 lncRNA upstream 92241 6332076 ~ 6345567 (+) True G1332
TU1948 lncRNA upstream 92241 6343925 ~ 6345567 (+) False G1332
TU1949 lncRNA upstream 94088 6339546 ~ 6343720 (+) False G1332
TU1991 lncRNA downstream 12591 6456067 ~ 6457358 (+) True G1367
TU2063 lncRNA downstream 96153 6539629 ~ 6541531 (+) True G1415
TU2048 lncRNA downstream 140500 6583976 ~ 6591255 (+) True G1405
TU2169 lncRNA downstream 466900 6910376 ~ 6911075 (+) True LOC122351800
XR_006251800.1 lncRNA downstream 466930 6910406 ~ 6911044 (+) False LOC122351800
XM_043242026.1 mRNA upstream 75308 6357828 ~ 6362500 (+) True uncx4.1
XM_043241683.1 mRNA upstream 110804 6313970 ~ 6327004 (+) True chtf18
XM_043241690.1 mRNA upstream 110804 6313970 ~ 6327004 (+) False chtf18
XM_043241895.1 mRNA upstream 138286 6294749 ~ 6299522 (+) True plk1
XM_043242291.1 mRNA upstream 145627 6288730 ~ 6292181 (+) True rasd3
XM_043241760.1 mRNA downstream 36660 6480136 ~ 6619283 (+) True elfn1b
XM_043245219.1 mRNA downstream 231921 6675397 ~ 6693693 (+) True LOC122348963
XM_043241235.1 mRNA downstream 318503 6761979 ~ 6765915 (+) True pmm2
XM_043251225.1 mRNA downstream 328010 6771486 ~ 6782135 (+) True rgs11
XM_043251232.1 mRNA downstream 328940 6772416 ~ 6782135 (+) False rgs11
TU1931 other upstream 150610 6285858 ~ 6287198 (+) True G1318
TU1714 other upstream 350153 6057404 ~ 6087655 (+) True G1183
TU1696 other upstream 556674 5879460 ~ 5881134 (+) True G1168
XR_006251062.1 other upstream 1460962 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 1492967 4938183 ~ 4944841 (+) True prkag3a
TU2062 other downstream 90026 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 268159 6711635 ~ 6845548 (+) True G1447
TU2148 other downstream 336142 6779618 ~ 6782141 (+) False rgs11
XR_006251795.1 other downstream 403024 6846500 ~ 6858568 (+) False LOC122351737
TU2312 other downstream 703661 7147137 ~ 7152220 (+) True mpc2a

Expression Profile