RNA id: TU2245


Basic Information

Item Value
RNA id TU2245
length 378
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1532
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6859889 ~ 6860266 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACtgataaaatgccatttttaatgcTCATTCGTACTACAAATCCTTCATATGggtattaattacataataaaatgtgcaaacagATAAAAGGCTATGTTATATGTTCACATTCTTTGGAATAGCTTGAACAGTTTGGGAACTGTTAGTAGACGCAAACTAAAATGGAAGACACATGTTTACATCACGCAAGGTTCATAATATGATCCACCTGGGCATTTTCAAACATTACTGACATTATCCATTTATAGCactttttatatgaaatgtctgaaatgtCTCAACACACACCCTGACATCATTCAGTCCTTATCCTTTTTAATCGACCAGTGATTTCAAATCAGGAAGGCCTTTCAGTTTGTAGTCGAGCAGCATTTGC

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2244 lncRNA downstream 1828 6857795 ~ 6858061 (-) True G1531
TU2242 lncRNA downstream 3781 6855795 ~ 6856108 (-) True G1529
TU2241 lncRNA downstream 5515 6854074 ~ 6854374 (-) True G1528
TU2197 lncRNA downstream 20480 6835654 ~ 6839409 (-) False G1499
TU2262 lncRNA upstream 98420 6958686 ~ 7002988 (-) True G1544
TU2274 lncRNA upstream 122693 6982959 ~ 7003701 (-) True G1553
TU2400 lncRNA upstream 265376 7125642 ~ 7169421 (-) False G1642
TU2399 lncRNA upstream 287716 7147982 ~ 7169421 (-) False G1642
TU2378 lncRNA upstream 290019 7150285 ~ 7152480 (-) True G1632
XM_043249001.1 mRNA downstream 14433 6839928 ~ 6845456 (-) True LOC122351719
XM_043249006.1 mRNA downstream 14433 6842324 ~ 6845456 (-) False LOC122351719
XM_043241193.1 mRNA downstream 25807 6828520 ~ 6834082 (-) True rnf175
XM_043242572.1 mRNA downstream 68020 6782533 ~ 6791869 (-) True pgap6
XM_043249388.1 mRNA upstream 148332 7008598 ~ 7019036 (-) True LOC122351948
XM_043249776.1 mRNA upstream 204859 7065125 ~ 7069577 (-) True cnpy3
XM_043238204.1 mRNA upstream 211323 7071589 ~ 7134282 (-) True trpc5a
XM_043238223.1 mRNA upstream 211323 7071589 ~ 7127407 (-) False trpc5a
XM_043238197.1 mRNA upstream 211323 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 318506 6539528 ~ 6541383 (-) False LOC122342514
XR_006251174.1 other downstream 391635 6458051 ~ 6468254 (-) False gaa2
XR_006251170.1 other downstream 585138 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 746366 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 1006645 5846076 ~ 5853244 (-) False LOC122346875
XR_006250919.1 other upstream 211323 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 302057 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 345318 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 358720 7218986 ~ 7295679 (-) False dmd
TU2800 other upstream 1743034 8603300 ~ 8607795 (-) True G1926

Expression Profile