RNA id: XM_043248141.1


Basic Information

Item Value
RNA id XM_043248141.1
length 374
RNA type mRNA
GC content 0.50
exon number 4
gene id spink4
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7720265 ~ 7721425 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgcatacatgtgTTAGTATTCCCACACTTCATTGCCATCATATAAAGTCATGCGAGCACTTCAGAGCTCATTCCGTGTCAGTATGTCTATACGAGTGCTTCTCTTCGGCCTGTTTCTGCTGCTCGCTTCAGGGGCGCAAGGAACACCCGGCTCATCCCGAAAGcCCGTGTGCGCTGAGATGGCCGAGATCCTCGCGTGTCCCATGAACTTCGCACCTGTGTGCGGCAGCGACGGGAACAGCTACGCCAACGAGTGCTTGCTGTGTGTGGAAAGACTGAAAACCAAATCTGATATTTTAATCACGAGGATGGCGACTGCTGAGCTTCTCCACAACACACAGGATCAATAAGATTAAAGCATCTGAAATAGAA

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2522 lncRNA upstream 12134 7706885 ~ 7708131 (+) True G1732
TU2478 lncRNA upstream 71641 7647889 ~ 7648624 (+) True G1698
TU2477 lncRNA upstream 91954 7624948 ~ 7628311 (+) True G1697
TU2489 lncRNA upstream 113765 7598267 ~ 7606500 (+) True G1706
TU2446 lncRNA upstream 138175 7513555 ~ 7582090 (+) True G1677
TU2548 lncRNA downstream 84285 7805705 ~ 7806252 (+) True G1751
TU2549 lncRNA downstream 85931 7807351 ~ 7808014 (+) True G1752
TU2547 lncRNA downstream 86883 7808303 ~ 7809221 (+) True G1750
TU2550 lncRNA downstream 89563 7810983 ~ 7811354 (+) True G1753
TU2551 lncRNA downstream 90733 7812153 ~ 7813651 (+) True G1754
XM_043237401.1 mRNA upstream 16134 7696411 ~ 7704131 (+) True LOC122343081
XM_043237381.1 mRNA upstream 29338 7687375 ~ 7690927 (+) True xpa
XM_043237367.1 mRNA upstream 35664 7680870 ~ 7684601 (+) True saraf
XM_043245590.1 mRNA upstream 39893 7663335 ~ 7680372 (+) True slc24a2
XM_043245976.1 mRNA upstream 59733 7651722 ~ 7660532 (+) True tspan5b
XM_043241502.1 mRNA downstream 10368 7731788 ~ 7738618 (+) True stra6l
XM_043241474.1 mRNA downstream 17346 7738766 ~ 7749449 (+) True tdrd7a
XM_043241491.1 mRNA downstream 17346 7738766 ~ 7749449 (+) False tdrd7a
XM_043241483.1 mRNA downstream 17936 7739356 ~ 7749449 (+) False tdrd7a
XM_043250953.1 mRNA downstream 28176 7749596 ~ 7761949 (+) True tmod1
TU2312 other upstream 568045 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 861697 6846500 ~ 6858568 (+) False LOC122351737
TU2119 other upstream 874717 6711635 ~ 6845548 (+) True G1447
TU2148 other upstream 938124 6779618 ~ 6782141 (+) False rgs11
TU2062 other upstream 1183308 6533502 ~ 6536957 (+) True G1414
unassigned_transcript_2 other downstream 740959 8462379 ~ 8462451 (+) True trnaa-agc
unassigned_transcript_3 other downstream 741852 8463272 ~ 8463344 (+) True trnaa-agc_1
TU2774 other downstream 885408 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 979020 8700440 ~ 8701372 (+) False stim2a
TU2886 other downstream 1049688 8771108 ~ 8778892 (+) False LOC122342651

Expression Profile