RNA id: TU2551


Basic Information

Item Value
RNA id TU2551
length 1499
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G1754
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7812153 ~ 7813651 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caaacacacacacacacacttcaaagaAATTCGCAAGATAAAGGACAGGATGAAGGGGTTTTGGAGATCGAGATGTGATAGGTGTGAAAAAGGTGGGTGTGCGAGAGCTACTCtgctcattaaatattcacCAATAGAGTAGTATTTCTatcctcaacacacacacacacacacacacacacacacacacacacacacacacactaaggcTAAACAATTAACAACACTCAGTCAAACAGGTGGCGTTCTGACTAGTGTGAAAAAGCATGTGACTAAGACAGTACAAGGATTAGGCTTTTAAAACCATTGCATAACCACTCACCGTACATGGCAATGATATTACTAATAAAACCCTTtcataaacatgtaaaaatgacataacaCATTTTCTGATAAAATGAATTTCAGTGGGGATTGATTTTATTGACCTAGATATGATCTGAGGACATATTATAAGGGACACGGTACAGgtcattattacaaaataaaaagggtttattcaccaaataaatacataaatacacatttaaaatattttttaacaaaaataaatattattttatcagaATAAATCTGATGGAACCAATGAAACCGCACAGGGTTAAAAGTACAGTAGATCTTCCCCCAGCTTCAAAGACGAGGCTTAAACCTAGTCCCAGTTTCAGCAATGCATGTCTGGCctgttttaactgaaagaaaTTTGCATGGATCGATCTTAAAACATATCagtgctgttgttttgtcttaagatgcacacgaGTAATGTAATTTTTCTAAAAGGCGAGTTTATACAAgatacttaaatgtcctaactgAACAACGGCCAAATCCTGGCTTAACCTTAAGCCAGGACTtcgttttttaatcattattatattgaaagaggaagtcttactgatTCCagcttctgattggtcagctggAGCTTCTGGCTGTGTTGCTGAACCTGCGCCAGCTGATTCTAAAACAGAACAGCGATCGTCAGTAAGAGCACAGACAAAGCACTTCAATAATTAACTAATGTGTATTATAATAAGCTTCAAGACACAATTAAGCCAATATTGCACAGCCAACAGCTAATATTGAATTCATATATTCAAACAATTCAGTCGGGCATGCCTTCTggtttatgtataatttttggAAAGTGCCGCGGGTCTGTTAGTTCTGTTAAGTGCGCCTGTATGTAGTTAAACACTGCCCTCTAGTGTTCACTCATCATATCACCTATTCTAGAAATATAAGTGAGGATTAAATCTAAGGTGATGCTGAACTGTTTTCAGAAACCAAACACGAGCATTAACACCAGATATGTGCTGTTAAAATGAACCTATGACTTATAAAGAAACTGAAAGTGTTAATATGCAAACACTGTAACCTGCATATGTTGCCGTTCAACTGCATGTATTTGTCCGTCACTTATGGAGCTCTGATACTGCGTCTGAAGTCGATCCAACTCCTGTGAAGCAGTCTGCCACATCTGAAGAGCCCGTTCTTTC

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2550 lncRNA upstream 799 7810983 ~ 7811354 (+) True G1753
TU2547 lncRNA upstream 2932 7808303 ~ 7809221 (+) True G1750
TU2549 lncRNA upstream 4139 7807351 ~ 7808014 (+) True G1752
TU2548 lncRNA upstream 5901 7805705 ~ 7806252 (+) True G1751
TU2522 lncRNA upstream 104022 7706885 ~ 7708131 (+) True G1732
TU2668 lncRNA downstream 141060 7954711 ~ 7985615 (+) False pcdh10a
TU2721 lncRNA downstream 581674 8395325 ~ 8474521 (+) True G1885
TU2752 lncRNA downstream 711930 8525581 ~ 8578361 (+) True G1902
TU2833 lncRNA downstream 817821 8631472 ~ 8634399 (+) False ppp2r2ca
TU2866 lncRNA downstream 882306 8695957 ~ 8697410 (+) True G1968
XM_043246399.1 mRNA upstream 7191 7797156 ~ 7804962 (+) True clta
XM_043246409.1 mRNA upstream 7191 7797156 ~ 7804962 (+) False clta
XM_043246420.1 mRNA upstream 7191 7797157 ~ 7804962 (+) False clta
XM_043216834.1 mRNA upstream 15593 7792648 ~ 7796560 (+) True nansa
XM_043240934.1 mRNA upstream 20111 7781142 ~ 7792042 (+) False gne
XM_043248903.1 mRNA downstream 4772 7818423 ~ 7821348 (+) False c1h4orf33
XM_043248893.1 mRNA downstream 5082 7818733 ~ 7821348 (+) True c1h4orf33
XM_043247758.1 mRNA downstream 153040 7966691 ~ 7985139 (+) True pcdh10a
XM_043247750.1 mRNA downstream 153040 7966691 ~ 7982812 (+) False pcdh10a
XM_043247764.1 mRNA downstream 153041 7966692 ~ 7985139 (+) False pcdh10a
TU2530 other upstream 90728 7720319 ~ 7721425 (+) False spink4
TU2312 other upstream 659933 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 953585 6846500 ~ 6858568 (+) False LOC122351737
TU2119 other upstream 966605 6711635 ~ 6845548 (+) True G1447
unassigned_transcript_2 other downstream 648728 8462379 ~ 8462451 (+) True trnaa-agc
unassigned_transcript_3 other downstream 649621 8463272 ~ 8463344 (+) True trnaa-agc_1
TU2774 other downstream 793177 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 886789 8700440 ~ 8701372 (+) False stim2a
TU2886 other downstream 957457 8771108 ~ 8778892 (+) False LOC122342651

Expression Profile