RNA id: XM_043247764.1


Basic Information

Item Value
RNA id XM_043247764.1
length 5006
RNA type mRNA
GC content 0.49
exon number 5
gene id pcdh10a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7954711 ~ 7985615 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACTGATGCTCACTCTCCTTGCAGAACTCGAGAAGAGGGGACCTACGGATTTCTAAGCATCCCGCAGATATTATGGACTATTAGACAACTACATGTAGAAAAGTGTTGCTTTTTTGTGCAGTAGCTCGCCTTCGGGATTTTGTTTTCAGCTGATTTTCACACCCACTACGCAAAAGAGTTTTTGGAAAGATTTTTGCTTCTCAGTAATAAGGATCGGGGCATCTGTACGTTCTGCAATGTCTTGCTGTGACGCACGGACTACTAAATTCTGCTCTCCTTGAGACAGCATTATATCAAATGGCTATAGATCTTGCGCATATGGCGACATGGTTTCCGGCTGACACAGGAGCTTTCTTGTTCGTTTGGGAAGTTGCGCAGCGCATATGTTTTCTTGGACCAAAGCGATGGGTAATTCCTAAGCTGTGACTGGAGAAGAAACGGTGTCAAGACAGAGCGAGGGAATAAAGAGGAGTGCACTTGTTGTTTGGAGATGATTTtgatatttctctttttctctatcTTGGATGGAGGGTTATCGCAGCTGCACTTCTCGGTACCGGAGGAGCAGGAGCGCGGGACGGTTGTGGGAAATATCGCCGAAGATCTGGGGCTGGACATCACCAAACTTTCCGCGCGGCGTTTCCAGACCGTGCCTAGCTCGCGCACGCCGTACCTGGAGGTCAACTTGGAGAACGGAGCGCTGGTGGTGAACGAGCGCATCGATAGAGAGGAGATATGTCGTCAGACCGTCCCGTGCCTCCTGCACCTCGAAGTGTTTTTGGAGAACCCACTCGAGCTGTTCCGCGTCGAGATCGAGGTAATGGATATTAACGACAATCCGCCGAGTTTCCCAGAGACGGACATCACCGTGGAGATCACCGAGAGCGCCACACCGGGCACCCGCTTCCCTGTGGAGAACGCCTTCGACCCTGACGTGGGGACTAATGCCTTGAGCACATACGCCATCACCACTAACAACTACTTTTATTTGGACGTACAGACGCAAGGCGACGGCAACCGCTTCGCGGAGCTCGTCCTGGATAAACCCCTGGACCGAGAGCAGCAGGCGGTGCACAGGTACGTGCTCACCGCCGTGGACGGAGGGCAGCCGCAGAAGACCGGCACCGCGCTGCTAGTGGTGAAAGTGCTGGACTCCAACGACAACGCGCCCACGTTCGATCAATCCGTTTACTCTGTGAGCTTGCGCGAGAACTCCCCAGTTGGCACGCTCGTTATTCAGCTCAACGCCACTGATATGGACGAGGGCCAGAACGGAGAGATTGTTTACTCTCTAAGTAGTCACAATCCGCCGCGCATTCGGGATCTGTTTAACATCGACTCGCGCACCGGGAGGATTGAAGTGACCGGTGAGGTGGATTACGAGGAGAGCAGCACGCACCAGATCTACGTGCAGGCTAAAGACATGGGACCGAACGCCGTGCCCGCGCACTGCAAAGTTCTGGTCAAACTCATCGACGTGAACGACAACACGCCGGAGATTAGTTTCAGCACGGTCACGGAGTCGGTAAGTGAGCAGGCTGTCCCGGGTACGGTGATCGCTCTGCTGAGCGTCACGGACCGAGACTCCGGCGAGAACGGACAGATGACCTGCGAGCTGCACGGCGAGGTTCCGTTCAAACTCAAGTCGTCTTTCAAAAACTATTACACGATCGTCACGGACGGTCCGCTGGACCGCGAGAAAGCGGAGTCTTACACGCTCACGGTGGTCGCCAAAGACAAGGGGGTGCCGTCTCTCTCCACAAGCAAGTCCATCAAAGTGCACGTCTCGGACGAAAACGACAACGCGCCGAGATTCATGCAGTCGGTTTACGACGTGTACGTGACGGAGAACAACGTCCCGGGCGCTTACATTTACGCGGTGAGCGCAGTGGACCCTGATGTTGGACAGAACGCCTATGTCACTTACTCCATATTGGAGTGCGAAATACAGGGTATGTCCATCTTAACCTACGTGTCAATCAACTCTGAGAACGGCTACTTGTACGCGCTGCGTTCTTTTGATTACGAGCAAATAAAAGAGTTCAGCTTTATGGTGCATGCCAAAGACTCCGGCGCGCCCGAGTTAACGGCCAACGCCACCGTTAATGTCATCATAGTGGACCAGAACGACAACGCCCCCTCTATAATCGCGCCTCTGGGCAAAAACGGCACAGCGAGGGAACATCTGCCCCGCTCAGCCGAGCCGGGATACCTGGTGACCCGTATTGTGGCCACGGATGCGGATGACGGTGAGAACGCGCGCCTGTCGTACAGCATCCTCCGAGGAAACGAGCTCGGGATGTTCCGGATGGACTGGAGAACCGGTGAGCTACGTACCGCGCGCCGGGTGTCCAGCAAACGGGACCCTCCGCATCCGTACGACCTGTTGATCGAGGTGCGCGACCACGGGCAGCCGCCGCTCTCGTCCTCTGCGAGCATCAACGTAGTGCTTGTGGACAGCATAGTGGAGGGCCGGAGCGGCGACCGGGGGTCGGTCAAGTCCAAAGAGGGCTCGCTGGACCTCACGCTCATCCTGATCATCGCGCTCGGCTCCGTCtccttcatcttcctcctcGCAATGATCGTGCTGGCGGTGCGATGTCAGAAGGACAAGAAACTAAACATCTACACGTGCATGGCCGGAGACTCGTGCTGTCAGTGCTGCAGTCGCCAAGCGCGCGGGCGCAAGAAGAAGCTCAGCAAATCGGACATCATGCTCGTCCAGAGCACCAACGTGGCCAGTACAGCACAGGTGCCGGTGGAGGAGTCAGGTAGCTTTGGCTCGCACCACCAGAACCAGAACTACTGCTACCAGGTGTGCCTGACTCCGGAATCTGCCAAAACCGACCTGATGTTCCTTAAACCTTGCAGCCCATCCCGGAGCACAGACACTGAGCACAACCCGTGCGGGGCAATCGTTACCGGATACGCGGATCAGCAGCCAGATATAATCTCAAATGGGAGCATTTTATCCAGCGAGACCAAGCACCAGAGAACCGAACTCAGCTACCTGGTGGATAGGCCCCGTCGTGTTAACAGTTCAGCATTTCAAGAGGCAGATATCGTCAGCTCTAAAGACAGCGGACACGGAGATAGCGAGCAGGGAGACAGCGACCATGACGCCACCAACCGGGGCCATACAGCAGGAGCTGATCTTTTCTCCAACTGCACTGAAGAGTGCAAGGCTCTGGGTCACTCCGACCGTTGCTGGATGCCCTCCTTCATGCCTGGCGACAGTCGCCAGGGCGCCGATTACCGTAGCAACCTGCACGTCCCAGGAATGGACGCGGTGCCGGACACTGAGCACGCAAAAGGATTTCCTAGCACCTTCCGCGTGGACATTCCTGAAAAAGCGTGAGTTTGCACAGTAACGCGACCGGCCAAAAGcatcaaggtttttttttttttttttttttcccttcatttcttttcttttttttattgaactcAATCACGGACGATCTGGTCGTTCCCAGCTCTGTCGGACGtctgaaacagattaaatcGGATGCGATCCGATGACGTAAGGACCCTGAGAATTCTCAGCAGGACTGAGAAACCTCGCCAAATCTCCTCCGAAAAACTGGATGAGAAGAGGGAAGAACAGAGGGAGAGTTTAAAAAGAGGATTAGGAGTGATGGAGAGACAATAGGAGAAAAATGGACAATGGACACGGTGTGTTTCCTCACTCTCTCCGCTCTATGATCAATGTGTCTCTGTTTACAGTCCACTGTAAACTATACCAACTATCTGAGCCCTTTACCCGTTtcgacacgcacacacacacacacacacacacgcatacacactgTACAAACGTACTGTACAAAGAGCAGCCCAAACTATGTGCATTATAAACTCAACTATCCGTTTTAGACTTGACTGTTTTCTatagtcgttttttttttcttcttaatcaGTGTGGTCAAGTGTTCTTCTGAAGTTACTATCTTTAGAAAAAGCGTGGATGCGGGggacaaaaaaatggaaaaagtaaaaaaaaaaaactaaaatagatGATTCTGTCCTCTCATTGGCCTATGGATACTTCATCTGACATTGTGGTTATCTTCACGTGTGCAAGTGTGTACTGTTCTCTTTTAAAGCTTCAAATAACtataaacctatatatatatatatatatatagaaacctatatatatatatatatatatatatatatatatatatatatatatatatatatatataaatatacttttttttctgaacctGTGTAGCCCATTGGATAGTTTCCTAAACACCATATTGCCATAAACCAATACAAAGTGCTGAAAAGACTTGCATTAAAATTGGGGCTTCGAATTGTGTGGCCTCTCTGTCTATAAGTGCAGAAGTATTTTATGCTGTAGTCATCTGATATAATTTTTGATCAAACGCACACAaattacatacaatatatagGCGAGACAGGGGCTAGTGGTCACATCTGTGTAAcgactaaaacatttttaaacatttaaatggttaattatcactcacataaaaatatatagtttatgaTATAATAGACCTTTTGTGAGAACATGCCCTTCAATTTACAAGATGCAATGTGTTTGCAACAATTTAGCAATTTGTGACGACCAGCTTGCCGAAgaactaaatatttcttatctgttgttttattgtatttacgTGTTTCCTCAACAGAATCGGAATTTGGAGCACagattttgcaaaaatgttctaGGGATGAATCTACAACCCACGTGTACGTTCAGTGCTAACAAAACCAGGTTTTTTAAAACTTAGCAGGTGAGATCCAGTCTTCGGTGACAACTCACCCGGTCTCCTGTCTCTCTATATAACACACATTAGATCACAGGCTCGTAGTTTCATTCAAAGCAATCCAGAACATCTTTTGCTTCTTGGCCTGAAATGATAAGCACGAGTATGAAAGACTTTGATTGCGGATGTTTATTCAGTCCTGCCACACTGACTGTGATTAGAGAgttgttttgaacattaaacTTCTTTGGCCTTTT

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2551 lncRNA upstream 153041 7812153 ~ 7813651 (+) True G1754
TU2550 lncRNA upstream 155338 7810983 ~ 7811354 (+) True G1753
TU2547 lncRNA upstream 157471 7808303 ~ 7809221 (+) True G1750
TU2549 lncRNA upstream 158678 7807351 ~ 7808014 (+) True G1752
TU2548 lncRNA upstream 160440 7805705 ~ 7806252 (+) True G1751
TU2721 lncRNA downstream 410186 8395325 ~ 8474521 (+) True G1885
TU2752 lncRNA downstream 540442 8525581 ~ 8578361 (+) True G1902
TU2833 lncRNA downstream 646333 8631472 ~ 8634399 (+) False ppp2r2ca
TU2866 lncRNA downstream 710818 8695957 ~ 8697410 (+) True G1968
TU2873 lncRNA downstream 727035 8712174 ~ 8714035 (+) True G1971
XM_043248903.1 mRNA upstream 145344 7818423 ~ 7821348 (+) False c1h4orf33
XM_043248893.1 mRNA upstream 145344 7818733 ~ 7821348 (+) True c1h4orf33
XM_043246399.1 mRNA upstream 161730 7797156 ~ 7804962 (+) True clta
XM_043249925.1 mRNA downstream 478692 8463831 ~ 8471506 (+) False noctb
XM_043249916.1 mRNA downstream 482136 8467275 ~ 8471506 (+) True noctb
XM_043238746.1 mRNA downstream 515535 8500674 ~ 8505353 (+) True LOC122344791
XM_043236617.1 mRNA downstream 520460 8505599 ~ 8566094 (+) True ank2a
XM_043236886.1 mRNA downstream 621686 8606825 ~ 8607785 (+) True cxcl8a
TU2530 other upstream 245267 7720319 ~ 7721425 (+) False spink4
TU2312 other upstream 814472 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 1108124 6846500 ~ 6858568 (+) False LOC122351737
TU2119 other upstream 1121144 6711635 ~ 6845548 (+) True G1447
unassigned_transcript_2 other downstream 477240 8462379 ~ 8462451 (+) True trnaa-agc
unassigned_transcript_3 other downstream 478133 8463272 ~ 8463344 (+) True trnaa-agc_1
TU2774 other downstream 621689 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 715301 8700440 ~ 8701372 (+) False stim2a
TU2886 other downstream 785969 8771108 ~ 8778892 (+) False LOC122342651

Expression Profile