RNA id: TU2721


Basic Information

Item Value
RNA id TU2721
length 1718
lncRNA type sense_over
GC content 0.51
exon number 2
gene id G1885
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8395325 ~ 8474521 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttATTCaggaatattttttgtatttgagtAAAATCTACTTGAGTACACTTTGAAACAAGAGTACAACAAAATAGAGCATACTTCAAATGTTGAATATACAAACTAGATTATTCTGAACACGAACATCTCGTTCTCCCTCTTTAAAGGACtaataaaaccaaaagaaaaatgcGCAACAAATGTATCTGAAGTCAAGATGCATGCTAATGATTGACCTTTTTGGGGCCTGGGGATTGGCATCTTTCCAGGATTTGGATCCAGATTTACTTACACCTAATCAGAACGGTCTTTTTAATCTGGCTGATTATGATGAGaatgcaaaaatgatttgcaGTTTGTTTGCCAATAATACTGTACTGGTAAAATGCgtgagggaagaaaaaaaaaaacaaaacaaacaaacatgagaaTAACACAAAAGCTTAATAAGCTTGACTTAAAAGAATAACGACAAACAAAACTGTTCTAAGGCTGCATTGTTTATAAATTCAgtaaactgtataattaatatatacaaagTCCATTTCTTCCTTTAGTAGCGGAGGAAGAATCGACACGTTCCTGTGAAACACGGGCAGAAGCGTGCGCTCACAGTGATCGTCAAAAGAAACTGCTGGTTTTGCCTTGCAATTTAAatgttcaagaaaaaaaaaactctttatacAAGTTATAAAAAGTTGAATGTATCCTCCCTCAAAGTTTCACATACTCGACTACTTCAACTACTCACTCCTTAGTGTTCTGCTTAGCTGTTATTAGTGTCAAagttagattaaaaaaaataataactgtagTGTCCTTTACATTGGTCCCTTTTAACAACAAATGAAATGACGGACATCCAGATTTAATCCACATGATGTAAGAATTGTGGTCTTtgcctgttttgttttgtctttttctgttttttaacatataaaatgaaACCACAATCCGAATCCGAAACTGTACAAGTTAACAAATCTCCAGTTTGTACTCCCAGAATGTGATATTGAATAATATCTGGGGAatataagtttatttattatagttcaTGACTGACTAAAGGCATCACTCTTCAGCTCTCTGCTTCACACTGTGGATTTGAAGCTTCCTCTAGCACCACCGCTGCTGCTTCCTGTGTGGGATTGTCCTGCTCTGGCTGTTCTGCTGAAGTGCTGTCGGGTTTTGACTCTGCGCTTTTTGCTTTTGGACAAAGCTGGCTCTGTTGAATATGGATCTGAACTGGAGTGGACGCCGTCTGAACAGAGATCGGGACTTGAGTTTGCGTCTGGATTGAAACGGGGAACTGCGTCTTCGCCTGAGCTGGACTCTGCTGGGCTGGGACTGCCAACCGGACCACCTGCGCCCCGGGCGCCACAGACACGGGGGCAAGGGCTCGGACGGCGAGGGGGGCGCCCATCAGGTTGATGCCCGTTGGGGTGCCCGGTTTGGCCTGTAGCTGACACTGCGTGAGCTGGGTTGCGGGGATGGTAATTATCTTGGCGAGCTGGACCGTGATCTTGTCACCGTTCTCGGCCGTGGCGGGAACCATCGTTGGCATGGTCTGGATTAGAACTTTGGGTGCGTTCGCACCAGCCGCTGAGCCGGTGTTGGTGGGCGCTGTAGTGAAGAGTGAAGAGTTCGCTGACTGCATGGCCACTGTTGAGATCTTCTGCCCCAAGGAGTTGGTCATTACGACCGGCACTTGCATAGCAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2668 lncRNA upstream 409710 7954711 ~ 7985615 (+) False pcdh10a
TU2551 lncRNA upstream 581674 7812153 ~ 7813651 (+) True G1754
TU2550 lncRNA upstream 583971 7810983 ~ 7811354 (+) True G1753
TU2547 lncRNA upstream 586104 7808303 ~ 7809221 (+) True G1750
TU2549 lncRNA upstream 587311 7807351 ~ 7808014 (+) True G1752
TU2752 lncRNA downstream 51060 8525581 ~ 8578361 (+) True G1902
TU2833 lncRNA downstream 156951 8631472 ~ 8634399 (+) False ppp2r2ca
TU2866 lncRNA downstream 221436 8695957 ~ 8697410 (+) True G1968
TU2873 lncRNA downstream 237653 8712174 ~ 8714035 (+) True G1971
TU2880 lncRNA downstream 255536 8730057 ~ 8730394 (+) True G1977
XM_043247758.1 mRNA upstream 410186 7966691 ~ 7985139 (+) True pcdh10a
XM_043247764.1 mRNA upstream 410186 7966692 ~ 7985139 (+) False pcdh10a
XM_043247750.1 mRNA upstream 412513 7966691 ~ 7982812 (+) False pcdh10a
XM_043248903.1 mRNA upstream 573977 7818423 ~ 7821348 (+) False c1h4orf33
XM_043248893.1 mRNA upstream 573977 7818733 ~ 7821348 (+) True c1h4orf33
XM_043238746.1 mRNA downstream 26153 8500674 ~ 8505353 (+) True LOC122344791
XM_043236617.1 mRNA downstream 31078 8505599 ~ 8566094 (+) True ank2a
XM_043236886.1 mRNA downstream 132304 8606825 ~ 8607785 (+) True cxcl8a
XM_043237640.1 mRNA downstream 148637 8623158 ~ 8634368 (+) True ppp2r2ca
XM_043237605.1 mRNA downstream 168938 8643459 ~ 8654328 (+) True crmp1
TU2530 other upstream 673900 7720319 ~ 7721425 (+) False spink4
TU2312 other upstream 1243105 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 1536757 6846500 ~ 6858568 (+) False LOC122351737
TU2119 other upstream 1549777 6711635 ~ 6845548 (+) True G1447
TU2774 other downstream 132307 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 225919 8700440 ~ 8701372 (+) False stim2a
TU2886 other downstream 296587 8771108 ~ 8778892 (+) False LOC122342651
TU3004 other downstream 560565 9035086 ~ 9035600 (+) True G2063
TU3085 other downstream 933884 9408405 ~ 9412437 (+) True G2125

Expression Profile