RNA id: XM_043236886.1


Basic Information

Item Value
RNA id XM_043236886.1
length 637
RNA type mRNA
GC content 0.41
exon number 4
gene id cxcl8a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8606825 ~ 8607785 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTGCAAGTTCCACATGTGGACAGAATACACCGACCGATCTGAACATCTCAAGCGTCTAGCATCCAAACtctatatttacttttactttttgttaGTTTCCGATTGTAAATCTAAGTTTCTCTTTTGAAGAATGCACTGCAAAATCTTTTTAGTCTCTGTTATCGTATGCCTCGGATTCCTGACCATTTGTGAAGGAATGAGCCTTAGAGGCCTGGGTGTAGATCCACGGTGTCGCTGCATTGAGACTGAGAGTCGACGCATCGGAAAACACATAGAAAGTGTGGAGCTCTTCCCTCCGAGCTCACACTGTAAAGACACAGAGATCATTGCAACCCTGAAGGGATCCAGGAAAGAGATCTGTCTGGACCCTACTGCACCCTGGGTTAAGAAGGTCATTGAGAGGATCCTTGCCAACAAAACCCTATGAATGGCTGGGTCATCTGTGAAGTTGAGCCTGAAGATATGAAAGATATGGCCGCATCTGACATATTAAACTGTACCAATGGGAACAGTGTTTGGTTATGCTTAAAACAGTTTGTTCAATGTTGAATGTTGTTCACAAAAGTGTTGCGTGTTGTATTTatatctatgtatttatttattatatattttgtaataaaatgattttgtactaa

Function

GO: NA

KEGG:

id description
K05505 CXCL1_2_3, GRO; C-X-C motif chemokine 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2752 lncRNA upstream 28464 8525581 ~ 8578361 (+) True G1902
TU2721 lncRNA upstream 132304 8395325 ~ 8474521 (+) True G1885
TU2668 lncRNA upstream 621210 7954711 ~ 7985615 (+) False pcdh10a
TU2551 lncRNA upstream 793174 7812153 ~ 7813651 (+) True G1754
TU2550 lncRNA upstream 795471 7810983 ~ 7811354 (+) True G1753
TU2833 lncRNA downstream 23687 8631472 ~ 8634399 (+) False ppp2r2ca
TU2866 lncRNA downstream 88172 8695957 ~ 8697410 (+) True G1968
TU2873 lncRNA downstream 104389 8712174 ~ 8714035 (+) True G1971
TU2880 lncRNA downstream 122272 8730057 ~ 8730394 (+) True G1977
TU2882 lncRNA downstream 133047 8740832 ~ 8742521 (+) True G1979
XM_043236617.1 mRNA upstream 40731 8505599 ~ 8566094 (+) True ank2a
XM_043238746.1 mRNA upstream 101472 8500674 ~ 8505353 (+) True LOC122344791
XM_043249925.1 mRNA upstream 135319 8463831 ~ 8471506 (+) False noctb
XM_043249916.1 mRNA upstream 135319 8467275 ~ 8471506 (+) True noctb
XM_043247764.1 mRNA upstream 621686 7966692 ~ 7985139 (+) False pcdh10a
XM_043237640.1 mRNA downstream 15373 8623158 ~ 8634368 (+) True ppp2r2ca
XM_043237605.1 mRNA downstream 35674 8643459 ~ 8654328 (+) True crmp1
XM_043237616.1 mRNA downstream 36223 8644008 ~ 8654328 (+) False crmp1
XM_043237626.1 mRNA downstream 37409 8645194 ~ 8654328 (+) False crmp1
XM_043246987.1 mRNA downstream 47751 8655536 ~ 8660047 (+) True LOC122350473
unassigned_transcript_3 other upstream 143481 8463272 ~ 8463344 (+) True trnaa-agc_1
unassigned_transcript_2 other upstream 144374 8462379 ~ 8462451 (+) True trnaa-agc
TU2530 other upstream 885400 7720319 ~ 7721425 (+) False spink4
TU2312 other upstream 1454605 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 1748257 6846500 ~ 6858568 (+) False LOC122351737
TU2848 other downstream 92655 8700440 ~ 8701372 (+) False stim2a
TU2886 other downstream 163323 8771108 ~ 8778892 (+) False LOC122342651
TU3004 other downstream 427301 9035086 ~ 9035600 (+) True G2063
TU3085 other downstream 800620 9408405 ~ 9412437 (+) True G2125
XR_006252046.1 other downstream 1187414 9795199 ~ 9795414 (+) True LOC122353673

Expression Profile