RNA id: TU306


Basic Information

Item Value
RNA id TU306
length 255
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G217
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1383753 ~ 1384030 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCACATTAACCAGTGCTGTTCATTCACgcttctttgtctttcttttctatcCCCGAGGCAATAATCGCATCCTTTAGAATAATGCTGAGAAAGAGCTCGGATTTCACAGTATTCTTGCTCAGGCCGCTTTATTAGGGCTCAAATGATATCCCTGTTAATTCAAGGATTTTACAAAACATCACTGCACACCCATTTCTCAAAGGCATTGGCAGATACACGTTGCAAGCCGTTATTGTGGCATGATGGATTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296 lncRNA upstream 47408 1329595 ~ 1336345 (+) True G207
TU245 lncRNA upstream 165019 1218065 ~ 1218734 (+) True G175
TU193 lncRNA upstream 171610 1166508 ~ 1212143 (+) False G138
TU194 lncRNA upstream 213081 1126766 ~ 1170672 (+) True G138
TU288 lncRNA downstream 12869 1396899 ~ 1398974 (+) True G203
TU321 lncRNA downstream 83455 1467485 ~ 1468131 (+) True G227
TU396 lncRNA downstream 101116 1485146 ~ 1485643 (+) True G270
TU401 lncRNA downstream 157292 1541322 ~ 1611176 (+) True G273
TU469 lncRNA downstream 521622 1905652 ~ 1905963 (+) True G312
XM_043247574.1 mRNA upstream 36960 1334924 ~ 1346793 (+) False LOC122350806
XM_043247717.1 mRNA upstream 36960 1334924 ~ 1346793 (+) False LOC122350806
XM_043247653.1 mRNA upstream 36960 1337881 ~ 1346793 (+) True LOC122350806
XM_043248864.1 mRNA upstream 52204 1328385 ~ 1331549 (+) True LOC122351641
XM_043242789.1 mRNA upstream 121785 1260177 ~ 1261968 (+) False LOC122347468
XM_043222498.1 mRNA downstream 55010 1439040 ~ 1441471 (+) False LOC122327253
XM_043222583.1 mRNA downstream 55010 1439040 ~ 1441471 (+) False LOC122327253
XM_043244881.1 mRNA downstream 72056 1456086 ~ 1465285 (+) True LOC122348945
XM_043244943.1 mRNA downstream 77194 1461224 ~ 1465285 (+) False LOC122348945
XM_043245929.1 mRNA downstream 141077 1525107 ~ 1570888 (+) False runx1
TU190 other upstream 263032 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1205553 177716 ~ 178200 (+) True G10
TU309 other downstream 55043 1439073 ~ 1441439 (+) False LOC122327253
TU310 other downstream 55043 1439073 ~ 1441439 (+) False LOC122327253
TU311 other downstream 55043 1439073 ~ 1441666 (+) True LOC122327253
TU616 other downstream 801829 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 1099643 2483673 ~ 2485988 (+) False grtp1a

Expression Profile