RNA id: TU3114


Basic Information

Item Value
RNA id TU3114
length 2894
lncRNA type intronic
GC content 0.36
exon number 2
gene id G2149
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9784218 ~ 9787161 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attttggtAGTTTTAGaattaagtttaaattttatacgttcatttttatatatatatagtgtgtgtatataatatatttttaccttttttattttacagagaaTTTTGCAGAGAACTGCTAGTTTTGTTAATGCTTCACCAAgagttttttgtcatttcatcaTACTGATGTCTGTGTTTAGTTTTTCGGATACTTTACTATCTTTGTGTTGAACCGGCTGcgaataataacataatatcgTAAGTGCTCTCAGTAGGCAGGCACATTAAAGGCCTTTGTTTTTACAGCGAATATGTCAGAATATGTCTGCTCATCCTgatggtgtgtttgtgttctaaTGGCTAATAGAGGGCGTCTGTAGGAAGCAGTAGTTTAATGATTGTGGAGAGCTGTGTGCAGATGCCCTGTATTTACTTAGTCTGTTATTCACAATGAAAGGGTAATTTCAGCTTGGCTTCCTCAGATGACACAGCAGTTAGACAGGTCTGTTTGTCTGAGCTGACAACTGCAGGGTACCAGacattgtgtgtttgtgggctAAAGGGCGCATGCTAGCTTGTGTGGAAGTGTGATCGTTGTTACTCATCTTAGAAGTCGACAGCAGTAATCACTGTTTTTACCGCTGTTTTTAGATCAAAGAGTAAAATGCTTCAGGCGGCGTCTAAGTCACACCGTGGGCCTGGCTGTGGTGTTACATAGAATGATGACCTCACGTTAATGGTTTCCTGTAACCACAGCCTTGTGACGTCGCTCTTCCAGCAGATCCATGATGAAATTGTGAAACGGGAAAAACAGCTATTAATGTTTTGGGTAAAAAAGAGAGTCGTTTATTTATCAGTTTCGTCACATGGCCATCAGTGGGCAAATTAATGGGGGTGAATCCAGAAACATATGAgcaaagatataaaaaaatggatttgaTTCATACCAGATCCCAGAAAACAgttcaaaaatgtaaagttaaatGGAATCAATATTCAGTCTTTgctagaaatgtatttttatttcagttttaaagattttagcatataaaaatatatattttgcatatttaatattaatattaatattctaccaaatctaaaatgcatatgttttatCCTACACTAATAAAATTGTTGAAATTACTTTGAAACTAATTTCAAGTTAACTTCAATTAAAGGTGAAATACTGAACTAGTATActgaaatacttttatataccAATACATAATTTGGTCacgctttatattaggtggttCTAACTcctatgtacttacatcagttgtgttcatattgtactgTACAACACGTTCGTTGTTATTAAGGtggggttagaggttagggacaggtttgggtaggtttaagggtgggttaaatTTTAATAGggttaacagtgtaattatatatgtaattacagaaagtacaatgtaaaacatgtatgtacacaataagtgcattgtatcaaatcattcatttaaatgaatgtacacagtagttaaggccacctaatagcCTATGATGTGGGACCAATATTTAAGTGTACATCTTTGTATACTGTCGCTATAATGATAGTTATAATTCTATGAACTTTTGACAGGTCATTGGCAGCTACCTTTTAAGGCAGCATCCAACTTATTAAGTGACTGATTTAGAGTGTTCTTACATAAGTAGCCAGCAGCACCTGTTAAGAGTCACTTATACATGCATCACACTAATAATGCTCCTCACAGTACACTTTGGCCATTGCACACTGAGTCCGAAActtttgcatgttaaaaaataaatgatctcATGTTTATGTACGGTCCACAGTTTGGCCAAAGGAAGGCGTCCATGGGTGGATAAACTCTAATCTGACtccattttattaatcaatctGACTCAAATTCTAGTTAACTCTGGTATCAACTCTAGTTAACTCATGTCGCTAGCAAGGATACAACACAATCTACTAGAGTCAATAATTACAGAGTAAAACAGAATATGAgatgtaacaatttatttttagtcaggTTAATATCCATTACATCAATTACATAGCCAATTCAAAGATATCTAATCATATTGATACAAAATATCACattctaaaagtaaaatatgcatACCTGACCTTGAGAAATACATAGTATGAAATGTagagacacacaccacactacgggcttTCTGGCTACAGGACTGCCCTGATCcttttgctgtgtttatttaaatatcaaaccGAGATGAAACATCCCCCGAATGGAGGAATGTACCAAGACTTAGAATTGGCATTAACACAGGTGTCAGACCTGGGTAGTTTACACCTCAATGGGAACAGAAGGTCATTTACATGGAATGGCTCTGGGGGATGGCACACTCATTGCAGTAACTAAAATATCTCTGAAATCTTCAAATCTTTATTACCTTTAAGTTTACTTCTGTAGAAATGAGGCCATTGAACCAGAGGCATTTCAAATAATACCAATCATGACTGTTAGTTAACTTGCATTgccatttttatgtattcattttgaaCAGACTGAACAGAAGGAAAGATGGGTGGAGGGGTCCTGTGGTGTGTCTCGAAGATGCCCATATGTTTGTATTGTCTGTTTCTCAGGAGACCTGaggtttttttatctttatacaCGTTCAATCACGTTTACACACAGCCTCCAAAACTTTCATCCGTCATGAAAAAATTCAGATCAGGTTTGATTTCTGCCTTTTTGCCATAGCATGCATTTAGAAATACGATACATAATATGAAACAAACggaaaaacacatgaaaaaatTTCAGATTCAGTGTCCAATGGCCTTTACAGTTGCTTTCAACCGAGCAGCATTGTTGTGAATATGCACAAAAATGAACAGCACTCAAACATATTGGGTGCAATAGTGTGTTTTGTGGAATTGCTTTTTGTCAGTattgaag

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252042.1 lncRNA upstream 721609 9061961 ~ 9062609 (+) True LOC122353659
XR_006251927.1 lncRNA upstream 730745 9051908 ~ 9053473 (+) True LOC122352814
XR_006251869.1 lncRNA upstream 752395 9030823 ~ 9031823 (+) True LOC122352408
TU2882 lncRNA upstream 1041697 8740832 ~ 8742521 (+) True G1979
TU2880 lncRNA upstream 1053824 8730057 ~ 8730394 (+) True G1977
TU3213 lncRNA downstream 291724 10078885 ~ 10079470 (+) True G2219
TU3247 lncRNA downstream 585801 10372962 ~ 10373847 (+) True G2246
TU3429 lncRNA downstream 1040524 10827685 ~ 10829530 (+) False G2350
TU3428 lncRNA downstream 1047870 10835031 ~ 10837245 (+) True G2350
TU3431 lncRNA downstream 1050464 10837625 ~ 10838465 (+) True G2352
XM_043231599.1 mRNA upstream 89932 9633719 ~ 9694286 (+) True tusc3
XM_043238020.1 mRNA upstream 520148 9252816 ~ 9264070 (+) True pi4k2b
XM_043238000.1 mRNA upstream 532048 9237693 ~ 9252170 (+) False hgsnat
XM_043238008.1 mRNA upstream 532048 9237938 ~ 9252170 (+) True hgsnat
XM_043247547.1 mRNA upstream 547301 9234026 ~ 9236917 (+) True itln1
XM_043241164.1 mRNA downstream 12665 9799826 ~ 9805483 (+) True vps37a
XM_043236706.1 mRNA downstream 39942 9827103 ~ 9863686 (+) True mtus1b
XM_043245813.1 mRNA downstream 79003 9866164 ~ 9888659 (+) True pcm1
XM_043246000.1 mRNA downstream 79003 9866164 ~ 9888659 (+) False pcm1
XM_043245884.1 mRNA downstream 79003 9866164 ~ 9888659 (+) False pcm1
TU3085 other upstream 371781 9408405 ~ 9412437 (+) True G2125
TU3004 other upstream 748618 9035086 ~ 9035600 (+) True G2063
TU2886 other upstream 1005326 8771108 ~ 8778892 (+) False LOC122342651
TU2848 other upstream 1082846 8700440 ~ 8701372 (+) False stim2a
TU2774 other upstream 1176504 8606828 ~ 8607714 (+) False cxcl8a
XR_006252046.1 other downstream 8038 9795199 ~ 9795414 (+) True LOC122353673
XR_006252048.1 other downstream 9053 9796214 ~ 9796429 (+) True LOC122353681
XR_006252049.1 other downstream 10269 9797430 ~ 9797648 (+) True LOC122353686
TU3224 other downstream 457996 10245157 ~ 10245578 (+) True G2230
XR_006251239.1 other downstream 469501 10256662 ~ 10333672 (+) False fat1a

Expression Profile