RNA id: TU3213


Basic Information

Item Value
RNA id TU3213
length 586
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2219
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10078885 ~ 10079470 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGtcacatgtgtttgtgttattaCCTTTCATGTATCATGTGGATTATAATTAAAGGTTTTTTCGCAGATTACCTTTGTGTTTATCACTGCCTTTGGTGGAACCCTCAGAGAAACCGACCCACAAAAGATGAGGCTGACCAGGCTTAAATTAAGGTGGCACCAAAAGGGCAGTCTTCATAGCCCTTCAGGGGCTACAATATTTATTTCCAGAATGGTTGAGACCTGGAGGAATATGTGCTGGAGTTTTTGGACAATTGCCATCTTGCCGCATACGATGACTTCATCTTAACGGAGGGATTCTGGTGCGGGCTGGAAGACGATATCTGTTTTATCATGCCCAAAGCTGATCCGCGTTGATCGCAGATGAACTGCATCAACTTGGATCATTGGATCAGCGCTGTGGATCATCGGATCAACATTCACTAAGTGAAGTCCGGCCTTGGGTCATCACACGTGAGTTCCACCAGCCTAGAGTTATCACCTATCATGGCTGCTATGCCAAAACCCAGTCAGCTACCAGAGGTCTCTCGAGCCCACCACAGATGGAGAGCCAGTGCCTGTTGCGGTCACTGGGCCATCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3114 lncRNA upstream 291724 9784218 ~ 9787161 (+) True G2149
XR_006252042.1 lncRNA upstream 1016276 9061961 ~ 9062609 (+) True LOC122353659
XR_006251927.1 lncRNA upstream 1025412 9051908 ~ 9053473 (+) True LOC122352814
XR_006251869.1 lncRNA upstream 1047062 9030823 ~ 9031823 (+) True LOC122352408
TU2882 lncRNA upstream 1336364 8740832 ~ 8742521 (+) True G1979
TU3247 lncRNA downstream 293492 10372962 ~ 10373847 (+) True G2246
TU3429 lncRNA downstream 748215 10827685 ~ 10829530 (+) False G2350
TU3428 lncRNA downstream 755561 10835031 ~ 10837245 (+) True G2350
TU3431 lncRNA downstream 758155 10837625 ~ 10838465 (+) True G2352
TU3433 lncRNA downstream 868649 10948119 ~ 10982967 (+) True G2354
XM_043245813.1 mRNA upstream 190226 9866164 ~ 9888659 (+) True pcm1
XM_043246000.1 mRNA upstream 190226 9866164 ~ 9888659 (+) False pcm1
XM_043245884.1 mRNA upstream 190226 9866164 ~ 9888659 (+) False pcm1
XM_043246075.1 mRNA upstream 190226 9866164 ~ 9888659 (+) False pcm1
XM_043245962.1 mRNA upstream 190226 9866164 ~ 9888659 (+) False pcm1
XM_043242903.1 mRNA downstream 177192 10256662 ~ 10335202 (+) True fat1a
XM_043242917.1 mRNA downstream 177192 10256662 ~ 10335202 (+) False fat1a
XM_043242924.1 mRNA downstream 177192 10256662 ~ 10335202 (+) False fat1a
XM_043242940.1 mRNA downstream 177192 10256662 ~ 10335202 (+) False fat1a
XM_043242931.1 mRNA downstream 177192 10256662 ~ 10335202 (+) False fat1a
XR_006252049.1 other upstream 281237 9797430 ~ 9797648 (+) True LOC122353686
XR_006252048.1 other upstream 282456 9796214 ~ 9796429 (+) True LOC122353681
XR_006252046.1 other upstream 283471 9795199 ~ 9795414 (+) True LOC122353673
TU3085 other upstream 666448 9408405 ~ 9412437 (+) True G2125
TU3004 other upstream 1043285 9035086 ~ 9035600 (+) True G2063
TU3224 other downstream 165687 10245157 ~ 10245578 (+) True G2230
XR_006251239.1 other downstream 177192 10256662 ~ 10333672 (+) False fat1a
XR_006251240.1 other downstream 177192 10256662 ~ 10333672 (+) False fat1a
XR_006251241.1 other downstream 177192 10256662 ~ 10333672 (+) False fat1a
XR_006251238.1 other downstream 177192 10256662 ~ 10333672 (+) False fat1a

Expression Profile