RNA id: TU3247


Basic Information

Item Value
RNA id TU3247
length 802
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G2246
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10372962 ~ 10373847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTgaaacatgaacacacactACGCTGTAAAGCAATTAAGTACAATTAATTTGCCTCTAACAAAATCTAATATAAAGCAATACAATACGCGATTATAATTTGATCATTGATTGTGTGTCTTTATTTATGGATGAACCCACTAGGGTAAATATGTTTAGCTGAAATATTATCTCGGCAACAGCTCTGAATTACAAATGTACTAGTCACTGTAGCCATCATGTGTTTTAAACCTCTGACCTATTGACTCCTGTGGCTGAGCTGGTTCTTGGTCTGCTGGCTGTGACTGGATGTCCTGTGCTTGTCCATCAGGAGAGGGCGGTAGTCCAGGAGTCCAGACGGGTGTGTGTGAAGCGTAGAGAACACACTCCTCAGCTCTTCCTGGCTCTGACACACTCCTAACAGATGCAGCACAGCGCCCAGCTCAGCTGCAGACAGAAGCCCAGTGCTGGAGACATCCAGCCGGGCGCAGGCCTTGCTGATAGCCCTGGCCTTACGCTGGAGCTTTTTTTCTGATCTTGCCACTTAATGTTTCCGGAGCGGCTTCTTGTTTAGTTTCTCTAGGAGTCTGCAGAGCAGCCGCCATATTGGATCCGTGCTTCCATATTTGACTCTGGGATAGAAAAGGCTTGAGGAATTCTGTGTAGGATACACTGatataacaagaaaaaaaaatccatgagGGCGTGAAACGCTCAGTTATGTTTCATCTTATAGATGTGCATTCTCTATGAACTCTATTGCCAACACAGTCTCATACAAATTAGCCACTTCGcgaaatatgtacaaattgccTGGCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3213 lncRNA upstream 293492 10078885 ~ 10079470 (+) True G2219
TU3114 lncRNA upstream 585801 9784218 ~ 9787161 (+) True G2149
XR_006252042.1 lncRNA upstream 1310353 9061961 ~ 9062609 (+) True LOC122353659
XR_006251927.1 lncRNA upstream 1319489 9051908 ~ 9053473 (+) True LOC122352814
XR_006251869.1 lncRNA upstream 1341139 9030823 ~ 9031823 (+) True LOC122352408
TU3429 lncRNA downstream 453838 10827685 ~ 10829530 (+) False G2350
TU3428 lncRNA downstream 461184 10835031 ~ 10837245 (+) True G2350
TU3431 lncRNA downstream 463778 10837625 ~ 10838465 (+) True G2352
TU3433 lncRNA downstream 574272 10948119 ~ 10982967 (+) True G2354
TU3434 lncRNA downstream 574272 10948119 ~ 10982967 (+) False G2354
XM_043243168.1 mRNA upstream 5674 10365713 ~ 10367288 (+) True helt
XM_043243156.1 mRNA upstream 31754 10336685 ~ 10341208 (+) True casp3a
XM_043242903.1 mRNA upstream 37760 10256662 ~ 10335202 (+) True fat1a
XM_043242917.1 mRNA upstream 37760 10256662 ~ 10335202 (+) False fat1a
XM_043242924.1 mRNA upstream 37760 10256662 ~ 10335202 (+) False fat1a
XM_043243137.1 mRNA downstream 25489 10399336 ~ 10401667 (+) True slc25a4
XM_043243175.1 mRNA downstream 35997 10409844 ~ 10412143 (+) True ankrd37
XM_043243042.1 mRNA downstream 109793 10483640 ~ 10489120 (+) False tlr3
XM_043243041.1 mRNA downstream 109794 10483641 ~ 10490084 (+) True tlr3
XM_043243052.1 mRNA downstream 116415 10490262 ~ 10499474 (+) True LOC122347771
XR_006251239.1 other upstream 39290 10256662 ~ 10333672 (+) False fat1a
XR_006251240.1 other upstream 39290 10256662 ~ 10333672 (+) False fat1a
XR_006251241.1 other upstream 39290 10256662 ~ 10333672 (+) False fat1a
XR_006251238.1 other upstream 39290 10256662 ~ 10333672 (+) False fat1a
TU3224 other upstream 127384 10245157 ~ 10245578 (+) True G2230
TU3254 other downstream 23526 10397373 ~ 10398040 (+) True G2253
XR_006251248.1 other downstream 109793 10483640 ~ 10489111 (+) False tlr3
TU3404 other downstream 471165 10845012 ~ 10981356 (+) False LOC122347856
TU3408 other downstream 471165 10845012 ~ 10981356 (+) False LOC122347856
TU3407 other downstream 541329 10915176 ~ 10981356 (+) False LOC122347856

Expression Profile