RNA id: TU3335


Basic Information

Item Value
RNA id TU3335
length 1905
RNA type TUCP
GC content 0.50
exon number 4
gene id G2302
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10357181 ~ 10401686 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACCACAAGCACTGAGATGTtgtattttcagctttattcttattaaaagaacacaTAGGGTGGAATACACCACAAGAACAGTCGGATTTCCAGTGTACGGCCACTTGCTTCAGTCCGGGGAAAAATGTGTTCAGCTAGCTACAGAAGAGAGGAGCCACTGTAGAACATTATggattgtttcaaataaataaatcacttttagcCTGATCAGACTGAAAGTCATCTAAAACTGAAGGGCAGTAggtagatttaaatatatttacaagtgTTGGGGTGGAGATCTCATGATCTCATGATCTCAGTCCACCCCTGGGCCGTCTTGGCTAAGTACACTTAAGACATACACAGCGCTCAGAGGTTCCTTTGGTGGGATGGACATGATGGATTGAGAATGTTTATGTGAACTTCTTGATCTCGTCATACAGGACCAGCACAAAAGCACCACCCATGCCTCTGAGCACATTAGACCAGGCACCCTTGAAGAAAGCTTTGGGTCCCTCATCCTTGGTGATCTTCTTCCAACAGTCGAGTGTGCCCTTGTACATAATGTACCTCCTTTGCGTCCGGACTGCATCATCATACGACGTCTGACGGTGTCGAAGGGATATGAAATGATACCGGCAACAGCTGTGACAGTCTGGGCAATCATCCAGCTGACGACAATGTGTGTGTTCTTGGGGTCAGGGAGCATACCTTAGCTGTGTCATAGACACCGAAGTAAGCAGCTCTGTAGATAATAATGCCCTGGACAGACACGTTGAAGCCAAGGTAGAGACCCTTAATACCATCAGACTTGAAGATCTTGGCAATGCAGTTCCCGAGGCCAGTGAACTCTCTCTCCGCTGCTCCTTTGCCGATATCAGCAGCAAGCCTTGTTCTGGCGAAGTCGAGAGGGTAGACGAAGCACAGAGAGGTGGCGCCGGCAGCACCGCCAGAGGCCAGGTTACCGGCAAAATAACGCCAGAACTGGGTCTTCTGGTCAACTCCTCCAAGGAAGATCTTCTTGTACTTGTCCTTGAAGGCAAAGTTGAGGGCTTGTGTGGGGAAGTATCTGATGACGTTGGCGAGGTTGCCTCTCCAGAAGGACACGAATCCCTGCTCTTTGGGAATTCTCACTACGCAATCGATGATGCCTTTGTACTGTTTGTCAACCGTGATCTGTTTGCTGGCATGCTGGACCTGTGAAGCAGCAGTTTAGATTAGTAAATGGAAGGTGGCACACTTTATGTCATTGTGATCACATCAGATACACATTTTTGGAATATGTTGTGGATTATTGAGAATTTGCTTATGGTGATGTGCCAGTGCTGCAAGGTCATGTTGTATGGGAAACGCCAATAGATGTGgctgattttaaatgaaagctgTTTGGAGTTTAATTCTTTACACTCAGGGATCAGCCTGACCACGTGCGCGAGCTGCACTTGGCGTCACACCCCACTTGTGCGCGGGGTTTGAGTATTGGGTTGCAGACTCAagactatttttaactttaaacttaCACCAAATATCGCCGCTCTTCACAGTCACTATCTTAACGCACATGATTGGCCTTTATGAACTCTGGCACTGATGGAAAGAGTGACGGTCGTCAAGCTGTCTTGGAGATGGCAGCGGCCACACCACCGGCCAAGAAATCCTTCAAGAAGCTGATTACCGCGTCAGACATGATGTCCTATCTCCTGAATGACAATCTCACCACCAAAGGACCCTGCAAGAACCCCTGCGACGCCCCTTCAAATGGACGAGTGCTCGTGTTCGCTCCTAATATATCGGGACTCATTATCGCGAGAGGAGCAAATGATGGATCCACGAGAGACCGAACAGAATCTcgaagctgaataaatatcCCGGGTCATAGGCTAGAAGTCTTACGTAAGTTCATTAATGTCCCGGGTCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3314 lncRNA downstream 91472 10307504 ~ 10307715 (-) True G2293
TU3313 lncRNA downstream 91949 10306970 ~ 10307238 (-) True G2292
TU3305 lncRNA downstream 142300 10256650 ~ 10256887 (-) True G2286
TU3145 lncRNA downstream 606720 9787314 ~ 9792467 (-) True G2174
TU3099 lncRNA downstream 705749 9679896 ~ 9693438 (-) True G2138
TU3381 lncRNA upstream 276489 10678175 ~ 10678522 (-) True G2327
TU3382 lncRNA upstream 277124 10678810 ~ 10679017 (-) True G2328
TU3454 lncRNA upstream 423109 10824795 ~ 10825752 (-) True G2369
TU3460 lncRNA upstream 424856 10826542 ~ 10826779 (-) True G2374
TU3464 lncRNA upstream 436282 10837968 ~ 10839302 (-) False G2377
XM_043243046.1 mRNA downstream 356 10372924 ~ 10398831 (-) False si:ch211-197n1.2
XM_043243045.1 mRNA downstream 356 10372924 ~ 10398831 (-) False si:ch211-197n1.2
XM_043243044.1 mRNA downstream 356 10372924 ~ 10398831 (-) True si:ch211-197n1.2
XM_043243049.1 mRNA downstream 37499 10341828 ~ 10361688 (-) False acsl1a
XM_043243048.1 mRNA downstream 43713 10341828 ~ 10355474 (-) True acsl1a
XM_043243082.1 mRNA upstream 855 10402541 ~ 10408372 (-) False cfap97
XM_043243071.1 mRNA upstream 855 10402541 ~ 10408363 (-) False cfap97
XM_043243062.1 mRNA upstream 855 10402541 ~ 10408363 (-) True cfap97
XM_043243092.1 mRNA upstream 10204 10411890 ~ 10416197 (-) True ufsp2
XM_043236718.1 mRNA upstream 15074 10416760 ~ 10417566 (-) True si:dkey-256e7.8
TU2978 other downstream 1600832 8795071 ~ 8798355 (-) False LOC122351550
TU2970 other downstream 1616600 8779218 ~ 8782587 (-) False LOC122351550
TU2800 other downstream 1791392 8603300 ~ 8607795 (-) True G1926
XR_006250550.1 other downstream 3103508 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 3103554 7205584 ~ 7295633 (-) False dmd
TU3397 other upstream 340236 10741922 ~ 10745896 (-) False LOC122347930
TU3398 other upstream 355885 10757571 ~ 10760491 (-) False LOC122347930
XR_006251247.1 other upstream 408624 10810310 ~ 10814075 (-) False LOC122347618
TU3478 other upstream 552189 10953875 ~ 10981366 (-) True G2382
TU3498 other upstream 651468 11053154 ~ 11053941 (-) True G2401

Expression Profile