RNA id: TU3431


Basic Information

Item Value
RNA id TU3431
length 562
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G2352
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10837625 ~ 10838465 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caggtgtgtgtgcGGTAAATAATCTGCTATATGTGATTGGTGGAGATGATGGCTCATGCAACCTGGCTTCAGTGGAGTTCTACAATCCAAACACTGATAAATGGACTCTGCTGCCCACCTGCATGAGCACAGGACGCAGCTACGCAGGTGTGACTGTCATTGATAAGCCTCTCTGAGCAGCTGTGAAGTTGTTGAACACTAGAGCTGAAGCTGACGTACAGCAGAGGATTCGCTCACACTGAAGCACTTAACCACGACTGAGGCTTCATCCTGGATCTGCTTCACCATGGACATGGCCTGGAGAatactgctctctctctctgtctctctctctctctctctctgtctgtctctctctctctctctctctctctctctcacacccaTTCATATACGTAACTACAAACATTCACACACTACCTCTTTTTGTCTCTagtacacactcacacactctgcatctctcttttctttctgtttctcttgtTTGAGAGTAGTCAACGATGACGTTTATTGCACTTTGAGGAGCACTGACGAAGCAGAATCGAAACACTCTGAGAAAAGA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3428 lncRNA upstream 380 10835031 ~ 10837245 (+) True G2350
TU3429 lncRNA upstream 8095 10827685 ~ 10829530 (+) False G2350
TU3247 lncRNA upstream 463778 10372962 ~ 10373847 (+) True G2246
TU3213 lncRNA upstream 758155 10078885 ~ 10079470 (+) True G2219
TU3114 lncRNA upstream 1050464 9784218 ~ 9787161 (+) True G2149
TU3433 lncRNA downstream 109654 10948119 ~ 10982967 (+) True G2354
TU3434 lncRNA downstream 109654 10948119 ~ 10982967 (+) False G2354
TU3526 lncRNA downstream 362667 11201132 ~ 11201666 (+) True G2420
TU3538 lncRNA downstream 472128 11310593 ~ 11315354 (+) True G2430
TU3571 lncRNA downstream 500830 11339295 ~ 11341748 (+) True G2449
XM_043243188.1 mRNA upstream 102771 10723316 ~ 10734854 (+) True LOC122347952
XM_043243161.1 mRNA upstream 154665 10679587 ~ 10682960 (+) True LOC122347900
XM_043243052.1 mRNA upstream 338151 10490262 ~ 10499474 (+) True LOC122347771
XM_043243051.1 mRNA upstream 338151 10491518 ~ 10499474 (+) False LOC122347771
XM_043243041.1 mRNA upstream 347541 10483641 ~ 10490084 (+) True tlr3
XM_043243148.1 mRNA downstream 1963 10840428 ~ 10844345 (+) True LOC122347879
XM_043243113.1 mRNA downstream 6491 10844956 ~ 10866041 (+) True LOC122347856
XM_043243050.1 mRNA downstream 224147 11062612 ~ 11076698 (+) True LOC122347755
XM_043236779.1 mRNA downstream 265672 11104137 ~ 11121875 (+) True LOC122342727
XM_043236800.1 mRNA downstream 284615 11123080 ~ 11143007 (+) True LOC122342742
XR_006251248.1 other upstream 348514 10483640 ~ 10489111 (+) False tlr3
TU3254 other upstream 439585 10397373 ~ 10398040 (+) True G2253
XR_006251240.1 other upstream 503953 10256662 ~ 10333672 (+) False fat1a
TU3404 other downstream 6547 10845012 ~ 10981356 (+) False LOC122347856
TU3408 other downstream 6547 10845012 ~ 10981356 (+) False LOC122347856
TU3407 other downstream 76711 10915176 ~ 10981356 (+) False LOC122347856
unassigned_transcript_4 other downstream 471928 11310393 ~ 11310464 (+) True trnap-agg
TU3862 other downstream 999166 11837631 ~ 11840166 (+) False LOC122350793

Expression Profile