RNA id: TU3571


Basic Information

Item Value
RNA id TU3571
length 962
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G2449
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11339295 ~ 11341748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCCAAGCATGAGTATGTGTTGATTGTGTAGGGAAAGACACACGTATATTGCTATCACCACAAAAGCACAAACAGAATCCACACCCAAATGTGGCACCGCTTTCACACTTAGCGCAAGTAAAAGTGTATGCGTGTAAATGCGAATTGCATGTCTATTTGAAATGCACTCGAACACTGACAAAGACGTTACctgattgattgttttttccATTTGCACAAGGCCCAGATTGGGTAAGGTTGTTTTGATGAACTCAACAATTGACTCAAGATTGTCGTGCTGCAGAATCAGAGGCTTATGGCTACCGAGCAGACTCAAAGCCACCTTGAAGATGACCTCCGATCCCTGAAGGAACAGCATGTCAACACTCGAGCCACAAATCCAAGAGGGAAGTGTGACGCGAAGGCGGTGAGGAACCAGGGAGCGGCGTAGAGACTGGGGCCGATCTCGTACTGTTCCAGATGGGTGTACAACTCCCTGTGATAGTCATGAAGCAGACGAGACAGCTGATACATCTGAATCtaagaaagaggagaaaaacagTTACTGACAATATCAGAAGAATATAAAAATGCCTGACAAAATATTGCTGccatttaattaaactgtatGTACACTCTAAAACAATCTCTCTCAACTGATGAACCTTAACCATGTTGCTTGGTTGTGATGTCATTATTGAACACTGCCTACAGTTATCGTAACAGATTCTTCTTGTATGCTTGGCAgtagaatttgtatttttttgcttgatttGTATAAGAGCTGTCAAAGCTTATTACGTGACtgattgtgtttatttgatttatggttgcagtatatgtaatataaaggaattcaacacaattttaaaaatgtaacttaaaagGAACACTGTACtacttttgaaaataggctgagaaacagttttactgttttctaatccattcagccaatcgACTATCCTGCAcagttcagctccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3538 lncRNA upstream 23941 11310593 ~ 11315354 (+) True G2430
TU3526 lncRNA upstream 137629 11201132 ~ 11201666 (+) True G2420
TU3433 lncRNA upstream 356328 10948119 ~ 10982967 (+) True G2354
TU3434 lncRNA upstream 356328 10948119 ~ 10982967 (+) False G2354
TU3431 lncRNA upstream 500830 10837625 ~ 10838465 (+) True G2352
TU3576 lncRNA downstream 9152 11350900 ~ 11351657 (+) True G2454
TU3594 lncRNA downstream 41283 11383031 ~ 11383387 (+) True G2468
TU3611 lncRNA downstream 42049 11383797 ~ 11385013 (+) True G2472
TU3657 lncRNA downstream 292178 11633926 ~ 11634160 (+) True G2511
TU3658 lncRNA downstream 293740 11635488 ~ 11635889 (+) True G2512
XM_043247726.1 mRNA upstream 36810 11295411 ~ 11302485 (+) True si:dkey-192k22.2
XM_043236800.1 mRNA upstream 196288 11123080 ~ 11143007 (+) True LOC122342742
XM_043236779.1 mRNA upstream 217420 11104137 ~ 11121875 (+) True LOC122342727
XM_043243050.1 mRNA upstream 262597 11062612 ~ 11076698 (+) True LOC122347755
XM_043243113.1 mRNA upstream 473254 10844956 ~ 10866041 (+) True LOC122347856
XM_043237533.1 mRNA downstream 54884 11396632 ~ 11401250 (+) True slc25a51a
XM_043250133.1 mRNA downstream 75329 11417077 ~ 11443465 (+) True rnf38
XM_043237297.1 mRNA downstream 104990 11446738 ~ 11489578 (+) True limch1a
XM_043237324.1 mRNA downstream 104990 11446738 ~ 11489578 (+) False limch1a
XM_043237334.1 mRNA downstream 104990 11446738 ~ 11489578 (+) False limch1a
unassigned_transcript_4 other upstream 28831 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 357939 10845012 ~ 10981356 (+) False LOC122347856
TU3408 other upstream 357939 10845012 ~ 10981356 (+) False LOC122347856
TU3407 other upstream 357939 10915176 ~ 10981356 (+) False LOC122347856
XR_006251248.1 other upstream 850184 10483640 ~ 10489111 (+) False tlr3
TU3862 other downstream 495883 11837631 ~ 11840166 (+) False LOC122350793
XR_006251287.1 other downstream 1302931 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 1302931 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 1344497 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 1371784 12713532 ~ 12717506 (+) False dnah6

Expression Profile