RNA id: XM_043235240.1


Basic Information

Item Value
RNA id XM_043235240.1
length 7792
RNA type mRNA
GC content 0.46
exon number 35
gene id ptprdb
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11514151 ~ 11580717 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTACGCGCGCGCGCATGTGTCTGTGCGAGCAGCATCCTGCATATCTTTGTTCgtgtcttcatcagatttgTGTTGAGATCAACTTGCGCCCCGACTCCTCTGGCTCCCGAGCCCACCTGCGTCTGGagactatttttaaaagcaaggtGCGAGCGCGTCGCGTGAAGCGCACCACTTCAAAAAGCTCAAAAAGCTCTTCACTTGTATCGGGCTATGCGCGTGGACACGGCGGGTTTTTGAGAACCGTACAGACTGCACTCGTCTGTTTTTTTGTCGGAGTTACCAGATTTTGGACTCTCGCTCGGGCGGATAGAGAGACAGATCTCCACCGGGATCTCCTCGCACCGAGACTGTACCTGGAGAATCCGATTGACTCAAATAGAACACAGAGGAGAGTCCTGTGGAGTCTGTCCTTCTTTCACCCAGCGAGAGACTGCTGAGTTTAGACTCAGTTTAAACTCATATTAGCACATCAGCTTCCGTAACTCTGACCAACAGCATGTGGGACATTAAAAGGTTATGAGTGCACTTACAGCTTGGTGATCCACATAGACAAGCCAATGAGAGGATGGCCAGAGGTCACATGATCTGCAGAAGCGCCTACCAGCCGGTACTACTGATTCTACTGAGCGTGCTCCAGCTGGCACATGCACAAAGTCCTCCTCAGTTCACCCGGACTCCTGTTGATCAGATAGGGGTtcaagggggcgtggcctcctTTGTATGTCAAGCCACGGGAGATCCACAGCCTAAAATCACATGGAGCAGAAAAGGCAAAAAAGTCACCAACCAGAGATTCGAGgTGATAGAGTTTGAGGATGGTTCAGGGTCTGCGTTGCGAGTGCAGCCGCTGCGGACCCCCCGTGATGAAGCTGTGTATGAATGTGTGGCGTCTAACGAAGCAGGAGAGATCAGCGCCTCCACACGTCTTAGCGTTCTCCGTGagGACCAGCTTCCCACCGGTTTTCCATCTATAGATATGGGCCCTCAACTAAAGGTGGTGGAGCGTTCTCGCACCGCTACCATGCTGTGTGCGGCCAGCGGAACACCTGACCCTGAGATCACCTGGTTTAAAGATTTCCTCCCCATAGATACACACACTCATGGGCGGATCAAACAGCTGCGCTCAGAGTCCTTTGGGGGTACACCTATCCGAGGTGCACTTCAGATTGATGAGAGTGAAGAAACCGATCAGGGTAAATATGAATGTGTCGCGACCAACAGCGAAGGAACGCGCTACTCAACACCAGCTAACCTTTATGTCAGAGAGTTAAGAGATGTGCGTCGCATCCCTCCTCGCTTCTCGGTGCCACCGATGGATTATGAGATCATGCCGGGAGGAAGTGTGAATATCTCCTGTCAGGCAGTGGGCGTTCCCATGCCATATGTCAAATGGATGCTGGGAGCAGAGGATTTGACTCCAGAAGATGACATGCCTATTGGGCGAAATGTTTTAGAGCTCACAAATGTACTCCAGTCTGCCAATTACACGTGTGTGGCCATGTCAACTCTCGGAGTTATTGAAACCGTTGCCCAGATCACAGTTAAAGCCCTTCCCAATCCTCCAGGAGCTCCAGTTGTCATGGAGCGATCCGCCACCAGCATCACTCTAATGTGGGACAGTGGAAATCCACTTCCTGTATCTTACTACATCATTCAGTATCGCCCCGCCTCCTCCACCGACCCCTTTAAAGAAATTGATGCCATAGCAACAACTCGTTACAGTGTGGGTGGACTCAGCCCCTATTCACACTATCATTTCCGGGTCGTGGCGGTAAATTCGATTGGCCGCGGCCCACCGAGTCAAACCGTGGAAGCTCGCACGGCCGAACAGGCGCCAAGTTCCCCCCCTCGTCGTGTCAGAGGTCGTATGCTGAGCGGCTCCACGGCAATGGTGCAGTGGGAGGAGCCAGAGGAAGCCAACGGTCAGGTGGTTGGTTACAGGGTGTATTACACCTCGGATTCAACACTGTCTGTGAGCCAATGGGAGAAGGAAATGGTTCGAGGGGcaaattttttaaacatacgAGACCTGACGCCGAACAAAACCTATTATATTAGAGTTCTCGCCTTCACCGCTGTTGGAGATGGACCACTTTCCAGCGATCTGCACATCATTGCCAAGACAGGAGTCCCATCGCAGCCCACAGAACTGAAGGCAGAGGTGAAATCGGAGACCAGCATTCTCCTGTCGTGGATCCCTCCTGCTCACAGTGGTACAGATGCCATCACTGGTTATGAGCTCATTTACAGGCTTGGAGACCAGCCAGAGCAGAAAATATCGTTTGATCCAAGCTCCAGTTATCTGCTGAAGAATCTGAAGCCGTTTTCCACCTACATATTTCAACTAGCAGCACGCAGCAAACACGGCCTGGGGGCATTCACTGGTGAAATCACCGTTCAGACTCCACAAACACTGTTTGCTGTGAACTTCAGAGTGAAAGCTGCTATGAAGAGTTCAGTGCTGCTGACCTGGGAGTCACGAACCACCAGTAATAAAGCACAGTCTCTTATTATCTCATATGGTGATGGTGAGAGTGTGGAGGTGGATGGGCGGCTCGGGCAGAAGTTGGTGACTAAGCTGAAGCCCCAGTCTCTTTACACCTTTACGTTAACTAGTAAAGCTGATGGCACTGGAGGTCTGCAGCACCGTGGAGACGCCATGACGGCTCCAAACCTGCTGACTAGGAAACCCCAGGTGCTGGATAAGGCCAGCTCTCAGAGCATCGCTACCCTGCAGCTGCCCACTGTCCAGGGACAGGCTAATGTCAGGGGTTTCTATATTGTAGTCGTCCCCCTGAAAAGGCAGAGAGGAGGAAACTTCCAAAATCTATGGAGTGATCCAGATGAGATGAACATTGATGAGCTGCTGAGGGAGATTAATGGCACCGGTCGCTCTGTGCGTCTACGGAGGCAGGCGGAGGCAAAAGCCTACATCAGCGCTCATTTCCAGAATCTTCCAGCTGAATTCAAACTAGGAGACGGACGTGTGTACGGAGCTTTCCTAAACCGGCCGCTTGTAAACGGACAGGAGTATGTGTGCTTCGTGCTGGCTATTCTTGAACTGGGCCAGAACACCCTGTACTCCACAAGTCCATTTTCTGATGCCGTGCTGTTCTCAGATGTTGAGCCGCAGCCAATCGTTGATGAGGAGGAGGGGCTTCTGTGGGTGGTGGGGCCAGTGCTGGCGGTCATTTTCATTATCAGCATTGTCATCCTCATTCTCCTCTTtaaaagCAAACCAGACAGGAAGCGGGCAGAGCTGGAGGGCAGGAAGTGCAGCTTTCCCAGCAGCAGTAAAGCCATGAGTTCCCAGCATCCATCTGACCCAGTGGAGCTGCGTAGAATCAACTTCCCAACGGCTGGCATGACCAGCCACCCTCCGGTGTCCGTCTCAGAACTGCCAGCTCACATAGAGAGGATGAAAGCCAATGACAACCTGAGGTTCTCTCAAGAGTACGAGTCTATTGATCCAGGGCAACAGTTCTCATGGGAACATTCTAACCTTGAGATTAACAAGCCAAAGAACAGATACGCCAACGTCATCGCCTACGACCACACCAGAGTTGCACTTTCCAACAACGATGGTGTTCCTGGCTGTGACTACATCAATGCCAACTTTATAGATGGGTACCGCCGACAGGGCGCTTACATCGCCACCCAGGGCCCCATGCCAGACACGTTTAGTGACTTCTGGAGAATGGTGTgggaacaacacacagcaaataTCATCATGATTACCAAACTTGAGGAGAAATCCAGGAATAAATGCGATCAGTACTGGCCCAGCAGAGGCACAGAGACGTACGGACTGATGCAAGTCAATTTACTGGACACGGTGGAGCTTGCGACCTACTGCGTCAGGACTTATGCTCTTTTTAAGAGTGGAAGTGGCGAGAAAAGGGAGGTCCGTCAGTTCCAGTTTACAGCATGGCCAGATCAAGGGGTACCTGAACACCCCACTCCCTTCCTGGCCTTCCTCAGACGGGTCAAAGCCTGCAACCCCCCAGACGCTGGACCTATTGTGGTTCACTGCAGTGCTGGTGTGGGCCGAACGGGCTGCTTCATTGTTATTGATGCCATGTTGGAGCGTGTGAAGCAGGAGAAGACGATAGATATTTATGGTCACGTGACTCTGATGCGATCTCAGCGAAACTACATGGTGCAGACAGAGGAGCAGTACGTCTTTATTTATGATGCACTGCTGGAGGCTGTTTCCTGCGGCAACACAGAGGTTCCAGCACGGAATCTTTACGCCTACATCCAGAGACTGTCACAGACGGAACCACCAGAACACATCACCGGAATGGAGCAGGAATTTAAACGGTTAGCTAATGCCAAAGCGCATAACTCCCGATTCATCAGTGCCAGCCTTCCGTGCAATAAGTTCAAAAACCGATTGGTCAATATCATGCCATATGAGACCACACGTGTGTGtctgcagccaatcagaggagtGGAGGGCTCAGACTATGTCAATGGCAGTTTTATAGATGGCTATAGGCAACAGAGGGCGTATATTGCGACTCAGGGGCCGCTGGCTGAGACAGTTGAAGATTACTGGAGAATGCTTTGGGAACATAATTCTACTATAGTAGTTATGCTTACTAAACTCAGAGAAATGGGAAGGGAGAAATGTCATCAGTACTGGCCATCTGACAGGTCAGCTCGCTATCAGTACTTTGTGGTGGATCCCATGGCAGAGTACAACATGCCTCAGTATATACTGCGAGAATTTAAAGTAACAGATGCAAGGGACGGTCAATCCAGAACAGTCCGGCAGTTTCAGTTCACGGACTGGCCGGAGCAGGGCGTGCCAAAATCTGGTGAAGGCTTCATTGATTTTATCGGTCAAgtgcacaaaacaaaagagcagTTTGGTCAGGATGGACCCATCTCGGTACATTGCAGTGCTGGCGTTGGGAGGACAGGTGTATTTATCACTCTAAGTATAGTATTGGAGAGGATGCGTTATGAAGGAGTGGTGGACATCTTCCAGACCGTCAAAATGTTGCGCACTCAAAGACCAGCCATGGTGCAGACAGAGGAGCAGTACCAGTTCTGCTACCGAGCAGCGTTGGAGTACCTGGGCAGTTTTGATCACTATGCAACATAAAACCATCCCCTGGACCAAGGGCCACATCATTACACACCGAGACCTGCGTCTGATCAATCCGACAGCCTCTTTCTGTTGCCCGCAGCTCAAGAGTCTGTTTGATTTTTCCCGACAGCACACAATTTAATAGCCAGACAGGGAGGGCAGCTGGGATACAGAGTTGTCACAACAAATCGTAGCTCCAATCATATAGCTGAAAGTTGTCAAGTCATATTTGAGGTGGAGTAAAACTCCTGGCGAACTTCCAGCAGATCCAATGAAATCGCTGGAATCCAACAACGTGCTGTCTGGACCGATTCAACAGACCGAAACCGGAGAGGAAACCACAATCAAGCAGTTtgatggtattttttttttacttatcaGAATTTGCTTCATACCAGACCCCCCCCTCAACCCACCCAAAACATGCAGTTTATTGCGGGATGCAGTCCGGGTTTCTAGTTTCCACAGTTTTTTGTCACCAGTTGTATAGTGGATCCACCAACTCACTAAAGTGAAAATACGAAATGAAATTCAGCGACACCCTAAGTATCGGTGCTTATGCCAGTATCCTGTTCGTTTTAActgtagcacacacacatagatatatGCGTACATATCTATCACAAGGAAAAATATCAAGCTAAAAATGGAGATTCGTCTCAAAAACTGTGCAATATTGAACGTGAACTGCACCTTCGAGTTTAAAACCACTCAAGTATTAGAGATATTCTCACTGTAATTATATCGTCTCATTAATCCTATATGATATAAAGTATAAAACGAAatgttattatgcatattagcacattatatataaaaatcgtCAATGTATTGAGTGATATTTATACTATGTGAGTGAGGTACTTGTCAGTGCACATAAGTTACGAAAAGTACTGATTGCagtaatgtttaaaatggattcttttttttttcttcactaaaCTTACCAAATCAACTATATACGTGCTTTCAGTCAGGATTCGACGAACTCGAAACGCGAGGTGAcgtttaaaacaataacataatgGATCATCTGACACTGGTAGTGCCTTATCATAGTCACATgtttaaaaatggttaaatgtTCCACGTTTATGGATATGAACCCGCTTTTAcgtttcaaaaaaataaataacgctTAAGCAAAGACAGTTGCATCCTCCAGAGTGAATTTTAATACGTAGTATATTTCACACCAAGACCAATTTTAAGTACCAGGGTGGTTCGTCCATTCAAGTGAAGTACTGCCAAGATGACTAGACAATTATATAACTGAAAGCCAATATGTGTCCATTTTTGAGAGGACACGCATTTATTGTATCTATATTGGGCCAAGAGAACCACATATTccattacatatatacaatagCGATTATATTCTAAATGATTTGTATTTGACATTGTAACGGAGCATAGAACAGGAAATAGTTTTCTCACTTTCGGTCCATGCCGCTGCAGGAAACGTGCATTTCTAACTGTTAATGTCTGCGTTCTTGTGATAGTATCGATGATGTTAGCGCGTTAACGTCAACAAAGAGAACTTTTTTCCAAGTGGATTTTAAAAGCCAGAGCTAGCCGAGCTAAATGAACGTTTTAAAAGACTTTACGCTATAAGTTTGACGCCCAGATTTTGATTCATAAAGCATTGCATGAGAAATTAGATCTACAACTTTGGGAACAAACTTGCACATGGAAACGGCTCTGTTGCGTCTGCGTCAATATCGCGGGCCGTAACGGCCGCGTGGTTCCAGTTTTGGATACGACTGCACTCTTGTTCTATGCACTAACCCTTACTATTTCTTCAACACAGAATGTTATTTGTATCGAATGAGATGAATTTCACAGTGTGTGCATGTTAAGAGAAACACAAGTTTTGGTTCCAAAGCTTAAGACAATATGTGCGTATTGTTATCGTTGAAAACTTTAGACGACAGGGTGGTTTAATACGAGTGGTTTTCCTTCTAGTCCAGTGGTAATAGTCATCATTTAGTAACTCCAAGAAAGTCTGGTCACTGCGAACTTCAGCTCATTTTTACGTTCAgtgtaaagaaatgttttcctttctttgcaGCATCTTCgtctttgtgtattttattttttattaagtcagttttgtatttgaaaCCTAACATGCAAATCTTCCATGATCTACCTTCTCCGTATCTGTTAGACTTTACAACCAAGTTTCAGGGTTTTTCAAATTTCAACTTTCGTTGAAACTAGCTATGCTTATATTTTCAAGAGGATATCAATTAGCATTTGTTTGATGGGAAATTCTATGCTAACCTGTCAGTGttttgaggagaaaaaaataaataaatcatctaTTTTCCAGTGCATGACAGTCCCCCATTTGTACAGATGCAAAGGCACCATCAGATTTTGATGAATCATGACATTGTTTCATGTGAAAAATAAACTAGCACAATCTATATCATGTAATCTGACCAAATATGCATTGTATCACCATTTTCATATCGTCGAATGTTGTGAGTGGTTTTACAATTTCACCCATCAATTaatgtgaaacacaaaagggaAATCTTTTACCTCTGATTTTgtagtaaatgtaaatatttcagaggatgttttctttttttaattttcctacTTTATGTTGTAAGGACAGATGTGTGAGAATACAATTGTATTggaaaagttttatttgttacaaataaaatagtaaGAATA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3711 lncRNA downstream 103371 11407565 ~ 11410780 (-) False zgc:195282
TU3709 lncRNA downstream 103371 11407608 ~ 11410780 (-) False zgc:195282
TU3710 lncRNA downstream 103417 11407608 ~ 11410734 (-) False zgc:195282
TU3713 lncRNA downstream 117620 11395734 ~ 11396531 (-) False LOC122343263
TU3690 lncRNA downstream 221138 11281523 ~ 11293013 (-) False klhl5
TU3821 lncRNA upstream 131269 11711973 ~ 11712523 (-) True G2630
TU3823 lncRNA upstream 132740 11713444 ~ 11715227 (-) True G2631
TU3824 lncRNA upstream 135429 11716133 ~ 11716935 (-) True G2632
TU3826 lncRNA upstream 139024 11719728 ~ 11720175 (-) True G2634
TU3827 lncRNA upstream 139597 11720301 ~ 11721030 (-) True G2635
XM_043236864.1 mRNA downstream 22118 11489952 ~ 11492033 (-) True phox2ba
XM_043244772.1 mRNA downstream 102438 11407565 ~ 11411713 (-) True zgc:195282
XM_043237659.1 mRNA downstream 117575 11395734 ~ 11396576 (-) True LOC122343263
XM_043248548.1 mRNA downstream 120325 11383791 ~ 11393826 (-) True pgm2
XM_043240107.1 mRNA downstream 171934 11336559 ~ 11342217 (-) False tbc1d1
XM_043235520.1 mRNA upstream 27857 11608561 ~ 11631643 (-) False rbm47
XM_043235512.1 mRNA upstream 27857 11608561 ~ 11631643 (-) False rbm47
XM_043235493.1 mRNA upstream 27857 11608561 ~ 11631642 (-) False rbm47
XM_043235485.1 mRNA upstream 27857 11608561 ~ 11631641 (-) True rbm47
XM_043235504.1 mRNA upstream 27857 11608561 ~ 11618405 (-) False rbm47
TU3761 other downstream 1318 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 15793 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 460210 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 532785 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 700076 10810310 ~ 10814075 (-) False LOC122347618
XR_006250806.1 other upstream 761031 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 762745 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 1323495 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 1323495 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 1573782 13154486 ~ 13159246 (-) False smim14

Expression Profile