RNA id: TU4114


Basic Information

Item Value
RNA id TU4114
length 233
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G2839
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12435917 ~ 12441497 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtaacatttacaatttaattccacttatttttacttgatgttTTCTACACACGTGGGTGAGTTAGAcacatatatgaagtataagagatatacattaccataaacGAATAAGGCCACAATTTGTATTTCGTCTATCTATCATGTTTTTGGATGTTCTAAACTTACCGATAAGCGCATCCTGCCCCGTTTCTTTGTCTAACTTCCACGAGCAGGTCGCCGCCATTGTTGTCTTT

Function

GO: NA

KEGG:

id description
ko00071 Fatty acid degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4096 lncRNA downstream 99158 12335352 ~ 12336759 (-) True G2829
TU4090 lncRNA downstream 145811 12289829 ~ 12290106 (-) True G2826
TU3987 lncRNA downstream 285201 12142906 ~ 12150716 (-) True G2750
TU3989 lncRNA downstream 337633 12097910 ~ 12098284 (-) False ugt8
TU3979 lncRNA downstream 506921 11927551 ~ 11928996 (-) True G2742
XR_006251338.1 lncRNA upstream 994 12442491 ~ 12443883 (-) True LOC122348535
TU4116 lncRNA upstream 12734 12454231 ~ 12454769 (-) True G2841
TU4117 lncRNA upstream 13857 12455354 ~ 12455572 (-) True G2842
TU4163 lncRNA upstream 108425 12549922 ~ 12550239 (-) True G2882
TU4170 lncRNA upstream 150944 12592441 ~ 12595294 (-) True G2889
XM_043236977.1 mRNA downstream 1019 12429730 ~ 12434898 (-) True LOC122342838
XM_043243043.1 mRNA downstream 16637 12407369 ~ 12419280 (-) True ncapd3
XM_043251215.1 mRNA downstream 29362 12390944 ~ 12406555 (-) True wdr19
XM_043238059.1 mRNA downstream 46200 12373818 ~ 12389717 (-) False glrba
XM_043238057.1 mRNA downstream 46205 12368875 ~ 12389712 (-) True glrba
XM_043236997.1 mRNA upstream 36021 12477518 ~ 12494325 (-) True adamtsl7
XM_043243721.1 mRNA upstream 58274 12499771 ~ 12544141 (-) True zcchc7
XM_043243673.1 mRNA upstream 166269 12607766 ~ 12617282 (-) True melk
XM_043243455.1 mRNA upstream 176986 12618483 ~ 12643576 (-) False LOC122348170
XM_043243446.1 mRNA upstream 176986 12618483 ~ 12643576 (-) True LOC122348170
XR_006250806.1 other downstream 69922 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other downstream 69922 12343449 ~ 12365995 (-) False gria2a
TU3761 other downstream 923084 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 937559 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 1381976 11053154 ~ 11053941 (-) True G2401
XR_006251305.1 other upstream 462702 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 462702 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 712989 13154486 ~ 13159246 (-) False smim14
unassigned_transcript_6 other upstream 776897 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 777799 13219296 ~ 13219368 (-) True trnar-ucg_1

Expression Profile