RNA id: TU4201


Basic Information

Item Value
RNA id TU4201
length 489
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G2918
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12794867 ~ 12873669 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttAGCCAATTACCCTTCtcggttttgtttattttgaacatatGCCTCCAAGCTTATGAGTTCACATTAAAGTTCTGCTAACTGTTGCCCCCCCCTTCCCCAATCAAAAAAAAGTGCCCAAAAATATTAGAACTAGAACTAAATGAggtacatcaaaaaaaaaaaaaagctaaaaataaatactgatgttAACAAAGAGCATAGTagtttaagtaaataaatagtggaaataaatgagaaatgacATTAATTCACAGTCAGACAGGCAGGCAGTTTGTGTAGCATGTATCAAGGCATGGTATAGGTTTAGAATCTGTGCTCTGTATTAGTTAGTGCATGAAGGGTTTTCCGAAACTGCTCATGGTTCTGGTCAAGTGGTCTGGCTCCTCTCAGGCTTTGGAGAGAGCCACGGCGGAGAAACGCACCTCCCCTTTCTCTCGCTCCATAAACTCACGGCACACCCTCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4122 lncRNA upstream 296998 12497641 ~ 12497869 (+) True G2847
TU4082 lncRNA upstream 354759 12439732 ~ 12440108 (+) True G2821
TU4081 lncRNA upstream 357609 12426545 ~ 12437258 (+) True G2820
TU4041 lncRNA upstream 399138 12392610 ~ 12395729 (+) True G2791
TU4059 lncRNA upstream 402673 12390112 ~ 12392194 (+) True G2806
TU4237 lncRNA downstream 62908 12936577 ~ 12937470 (+) True G2948
TU4275 lncRNA downstream 149759 13023428 ~ 13137686 (+) False G2967
TU4276 lncRNA downstream 149759 13023428 ~ 13139236 (+) False G2967
TU4279 lncRNA downstream 149759 13023428 ~ 13137686 (+) False G2967
TU4280 lncRNA downstream 149759 13023428 ~ 13155797 (+) True G2967
XM_043244081.1 mRNA upstream 70409 12659262 ~ 12724458 (+) True dnah6
XM_043243521.1 mRNA upstream 136360 12644679 ~ 12658507 (+) True kdm4c
XM_043243528.1 mRNA upstream 136360 12644679 ~ 12658507 (+) False kdm4c
XM_043243533.1 mRNA upstream 136360 12646116 ~ 12658507 (+) False kdm4c
XM_043243561.1 mRNA upstream 136360 12647052 ~ 12658507 (+) False kdm4c
XM_043243910.1 mRNA downstream 7450 12881119 ~ 12887654 (+) True anxa5b
XM_043243804.1 mRNA downstream 25957 12899626 ~ 12905289 (+) True zmynd10
XM_043243814.1 mRNA downstream 25957 12899626 ~ 12905289 (+) False zmynd10
XM_043243931.1 mRNA downstream 93096 12966765 ~ 12977670 (+) True gtf2e2
XM_043243405.1 mRNA downstream 212180 13085849 ~ 13123735 (+) True si:dkey-92j12.5
TU4187 other upstream 77361 12713532 ~ 12717506 (+) False dnah6
TU4185 other upstream 104597 12686245 ~ 12690270 (+) False dnah6
XR_006251287.1 other upstream 137272 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other upstream 146464 12644679 ~ 12648403 (+) False kdm4c
TU3862 other upstream 954701 11837631 ~ 11840166 (+) False LOC122350793
TU4406 other downstream 329584 13203253 ~ 13205688 (+) False rhoh
TU4563 other downstream 1240762 14114431 ~ 14118433 (+) True G3187
TU4564 other downstream 1240762 14114431 ~ 14115440 (+) False G3187
TU4698 other downstream 1606575 14480244 ~ 14481346 (+) True LOC122345399
TU4804 other downstream 1729007 14602676 ~ 14603849 (+) False lrata

Expression Profile