RNA id: XM_043243982.1


Basic Information

Item Value
RNA id XM_043243982.1
length 1876
RNA type mRNA
GC content 0.42
exon number 5
gene id smim14
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13154486 ~ 13159444 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCACAATTGGACGCCTCAGGACAGATACAAATCAACGTCAGCGCGAGCTACTTGCCATGCACGAACCGAGCCTTCGCCGTAGTAGCATTCCTAATTTTTGCTTCCCGATCATTATCAAAACACAGACGGAACATCAGCCGGAGCTGGGGCCCGTTGCCAAACACCAGTGTGCACAAGGGAGCATTCGCACTGGATTTGGCCTGTGCTGGCGGAGGCTCGCGGGGGTCAGTAGTCACATTTCGGTCCTCCAGGTTTGAGGCGAATGGTTTTAAATCCCTTCGAAAGAGGATGGCAGAGGGAGGTTTTGACCCCTGTGAGTGCATCTGCTCTCATGAACATGCCATGAGGAGACTCATCAGTCTGCTGAGACAGTCCCAGTCCTACTGTACAGACACAGAGTGCCTTCAGGAGATGCCAGGCCCTAACTCCTCTGTCGAAGGGGACATCACTCTGCCCATGATTATTATGGGATGGCTAGTTCTAGCTCTCATGCTCTTCTTGCTCCGCCCAGCCAGCTTGAGAGGCCCTTCAGCCAGCAGCAAGCCCTCTGGTCCCCGCGGTAATCGCGGCAGAGAGCCACCAGCACCTCCTGTGGACTAGAGCtttttccaccacaaaagatTTGATCTTTTAATCCATCTTCCACCTGATCAACTACTGTGACTAATATAACTTGTTAGTTTCCTTAATCATCTATCAGTGTTTCAGATTCCAGAGACTTTAGTCCGATGAAGGGGAGGGTGACGCTGAAAATGCTGAATTGTTGGAGTCTAAAGTTTCCCggatttatatatctatatatatatatatatcttattatatacttatatatattttattttattttattataaagcattattAGGTATTTAACAATTGGTAAAATCACATATAGGCCTATATAATGACATTTGTCCTAGatcatatgaatatgaattgtGATCTAGAAATTGGGTGTTGTCAAAAGATTTGGGTTGGTTTTGAGTAGACTGAAGTAAAAAGGATAATGTTTCTTGTCCTTTGGAGACCAGTACATTCCAAAGCTGTGATGACTTCACAGACATGATGTCATGATGAGAATGAGTCATTCTAAAGAcagatgcaattaaaatgatttaagattGACCAAGACCATTTCCAGTAGAGaccagtagaaaaaaaaagtagtataaGAGGAAAGAATGAAATGTGCGTATTCCAGTTTTGACGTCATGGCTGTGTGGATGTTGTCATGTTCTGGGATCTGTTGACCACAGAGAGGTGGCTGATTAAAAGCAGACCTCTCCACCCTGAAGGCTTTCTATTTACCCTTTATGTACAAAAATCACTAGATTTTTGTTGCTAGCATAGCCACTTGAATGCCGCTCTtaagacttttcttttttgcatttgctcAGGAATCATTATGTAGCTATACTTAAACAGTTGGTCAAATAGTATGGGTAACTGTCAAATGTCAGTGATGAAAGTCTGAAAGCAATGTAATCTTTAAAATTGATAAGAAAAATTGGGTACTTGGGAATTAAGGGCGAATTGACTAATAGTAGCACTTTGGTTGTGGCACCTTTTACAGTTGTGTACAGAATGCAAAGCTCCAGAAAAGCACCAAAGAGAGGATGTAAATGTGCCCCATTTCAAGTTTGGTGTAGCTTACTCAAACTTCCTGTCTTTTAAGTTCTGTGAGAATGTTAGAATGTCTTATTTGGTGCAATTAGCTGGACTAAGGATTTCTGGATGGATCggttgtggtggtggtggtgtggaTTTCAGGGCATGAAAAGTCTGTCTATGTACACTGTTATAATGAAACTGCTCTGTGAGAAAGGGCTTGATCTATGCACTTTtgtttactacaaataaatatgaataatagcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4359 lncRNA downstream 181474 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 266833 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 536444 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 559192 12592441 ~ 12595294 (-) True G2889
TU4163 lncRNA downstream 604247 12549922 ~ 12550239 (-) True G2882
TU4410 lncRNA upstream 46509 13205787 ~ 13206826 (-) True G3070
TU4414 lncRNA upstream 135419 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 143475 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 230797 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 231787 13391065 ~ 13391301 (-) True G3094
XM_043243773.1 mRNA downstream 462 13147444 ~ 13154024 (-) True ugdh
XM_043244042.1 mRNA downstream 13142 13137427 ~ 13141344 (-) True rpl9
XM_043243613.1 mRNA downstream 18072 13123871 ~ 13136414 (-) False rfc1
XM_043243607.1 mRNA downstream 18072 13123871 ~ 13136414 (-) True rfc1
XM_043243491.1 mRNA downstream 69983 12993244 ~ 13084503 (-) False adgrl3.1
XM_043243582.1 mRNA upstream 8881 13168159 ~ 13189762 (-) True pds5a
XM_043243590.1 mRNA upstream 8881 13168159 ~ 13189619 (-) False pds5a
XM_043243596.1 mRNA upstream 8881 13168159 ~ 13189379 (-) False pds5a
XM_043238283.1 mRNA upstream 239563 13398841 ~ 13422240 (-) False fam184b
XM_043238277.1 mRNA upstream 239563 13398841 ~ 13422238 (-) True fam184b
XR_006251305.1 other downstream 228004 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other downstream 228004 12904199 ~ 12926482 (-) True prom1b
XR_006250806.1 other downstream 788491 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other downstream 788491 12343449 ~ 12365995 (-) False gria2a
TU3761 other downstream 1641653 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_6 other upstream 59116 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 60018 13219296 ~ 13219368 (-) True trnar-ucg_1
unassigned_transcript_8 other upstream 61522 13220800 ~ 13220873 (-) True trnae-cuc
unassigned_transcript_9 other upstream 62304 13221582 ~ 13221654 (-) True trnar-ucu
unassigned_transcript_10 other upstream 63273 13222551 ~ 13222623 (-) True trnar-ucg_2

Expression Profile