RNA id: TU4412


Basic Information

Item Value
RNA id TU4412
length 428
RNA type TUCP
GC content 0.48
exon number 1
gene id G3072
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13291296 ~ 13291723 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccagacgatccaacggtagctactcggatctcgggttgcctggcggacatctcgacatggatgcaagagtaccatctacagctcaacctgacaaagactgagctgcttgtattccctgccactccaactacacagcatgacttcaccatccagctaggttcttcgtcaattaccccatcaacctcagtcagaaatcttggtgtaatcctcgatgaccaactaaccttcaaagatcacattgcaaagactgctcgatcctgcaggtttgcactacacaacatcagaaagatcaggccctttctaacagagcaagctgcgcagctacttgtccaggcccttgtcatttctagactggactactgcaatgctcttctggctggacttccatcgaacacaataaaacctctacaaatgattcagaatgcagc

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4410 lncRNA downstream 84470 13205787 ~ 13206826 (-) True G3070
TU4359 lncRNA downstream 318284 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 403643 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 673254 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 696002 12592441 ~ 12595294 (-) True G2889
TU4414 lncRNA upstream 2974 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 11030 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 98352 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 99342 13391065 ~ 13391301 (-) True G3094
TU4439 lncRNA upstream 99832 13391555 ~ 13391885 (-) True G3095
XM_043243582.1 mRNA downstream 101534 13168159 ~ 13189762 (-) True pds5a
XM_043243590.1 mRNA downstream 101677 13168159 ~ 13189619 (-) False pds5a
XM_043243596.1 mRNA downstream 101917 13168159 ~ 13189379 (-) False pds5a
XM_043244004.1 mRNA downstream 131852 13156838 ~ 13159444 (-) False smim14
XM_043243982.1 mRNA downstream 132018 13154486 ~ 13159278 (-) True smim14
XM_043238283.1 mRNA upstream 107118 13398841 ~ 13422240 (-) False fam184b
XM_043238277.1 mRNA upstream 107118 13398841 ~ 13422238 (-) True fam184b
XM_043250221.1 mRNA upstream 142494 13434217 ~ 13451163 (-) True lcorl
XM_043250215.1 mRNA upstream 144174 13435897 ~ 13451163 (-) False lcorl
XM_043250226.1 mRNA upstream 149563 13441286 ~ 13451163 (-) False lcorl
unassigned_transcript_98 other downstream 956 13290268 ~ 13290340 (-) True trnar-ucg_67
unassigned_transcript_97 other downstream 1273 13289951 ~ 13290023 (-) True trnar-ucg_66
unassigned_transcript_96 other downstream 1865 13289359 ~ 13289431 (-) True trnar-ccg_13
unassigned_transcript_95 other downstream 2696 13288528 ~ 13288600 (-) True trnar-ucg_65
unassigned_transcript_94 other downstream 3014 13288210 ~ 13288282 (-) True trnar-ucg_64
unassigned_transcript_99 other upstream 96711 13388434 ~ 13388506 (-) True trnar-ucg_68
unassigned_transcript_100 other upstream 97530 13389253 ~ 13389325 (-) True trnar-ucg_69
TU4632 other upstream 549819 13841542 ~ 13842643 (-) False LOC122350606
TU4627 other upstream 590555 13882278 ~ 13884236 (-) False LOC122350629
TU5035 other upstream 1455106 14746829 ~ 14748975 (-) True G3491

Expression Profile